KEGG   PATHWAY: srx00030
Entry
srx00030                    Pathway                                
Name
Pentose phosphate pathway - Sinocyclocheilus rhinocerous
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
srx00030  Pentose phosphate pathway
srx00030

Module
srx_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:srx00030]
srx_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:srx00030]
srx_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:srx00030]
srx_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:srx00030]
Other DBs
GO: 0006098
Organism
Sinocyclocheilus rhinocerous [GN:srx]
Gene
107723949  glucose-6-phosphate isomerase-like [KO:K01810] [EC:5.3.1.9]
107712583  glucose-6-phosphate isomerase-like [KO:K01810] [EC:5.3.1.9]
107752475  glucose-6-phosphate isomerase-like [KO:K01810] [EC:5.3.1.9]
107734969  glucose-6-phosphate isomerase-like [KO:K01810] [EC:5.3.1.9]
107705737  glucose-6-phosphate 1-dehydrogenase-like isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
107723128  glucose-6-phosphate 1-dehydrogenase isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
107757376  6-phosphogluconolactonase-like [KO:K01057] [EC:3.1.1.31]
107711179  6-phosphogluconolactonase-like isoform X1 [KO:K01057] [EC:3.1.1.31]
107708743  GDH/6PGL endoplasmic bifunctional protein-like [KO:K13937] [EC:1.1.1.47 3.1.1.31]
107713525  GDH/6PGL endoplasmic bifunctional protein-like [KO:K13937] [EC:1.1.1.47 3.1.1.31]
107716232  6-phosphogluconate dehydrogenase, decarboxylating-like [KO:K00033] [EC:1.1.1.44 1.1.1.343]
107708839  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
107725216  ribulose-phosphate 3-epimerase-like [KO:K01783] [EC:5.1.3.1]
107739952  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
107712719  transketolase-like [KO:K00615] [EC:2.2.1.1]
107751206  transketolase-like [KO:K00615] [EC:2.2.1.1]
107737598  transketolase-like [KO:K00615] [EC:2.2.1.1]
107743250  transketolase-like isoform X1 [KO:K00615] [EC:2.2.1.1]
107711369  transaldolase-like isoform X1 [KO:K00616] [EC:2.2.1.2]
107728189  transaldolase-like [KO:K00616] [EC:2.2.1.2]
107733738  ribose-5-phosphate isomerase-like [KO:K01807] [EC:5.3.1.6]
107747582  rpia; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
107746823  shpk; sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
107725660  deoxyribose-phosphate aldolase-like isoform X1 [KO:K01619] [EC:4.1.2.4]
107757227  deoxyribose-phosphate aldolase-like [KO:K01619] [EC:4.1.2.4]
107726083  rbks; ribokinase [KO:K00852] [EC:2.7.1.15]
107737448  ribokinase-like [KO:K00852] [EC:2.7.1.15]
107731639  phosphoglucomutase-1-like [KO:K01835] [EC:5.4.2.2]
107754779  phosphoglucomutase-1-like [KO:K01835] [EC:5.4.2.2]
107719261  phosphoglucomutase-1-like [KO:K01835] [EC:5.4.2.2]
107739071  phosphoglucomutase-1-like isoform X1 [KO:K01835] [EC:5.4.2.2]
107746017  phosphoglucomutase-2-like [KO:K15779] [EC:5.4.2.2 5.4.2.7]
107746314  ribose-phosphate pyrophosphokinase 1-like [KO:K00948] [EC:2.7.6.1]
107746148  ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
107748636  ribose-phosphate pyrophosphokinase 1-like [KO:K00948] [EC:2.7.6.1]
107733231  ribose-phosphate pyrophosphokinase 1-like isoform X1 [KO:K00948] [EC:2.7.6.1]
107705518  regucalcin-like [KO:K01053] [EC:3.1.1.17]
107706673  regucalcin [KO:K01053] [EC:3.1.1.17]
107750240  glycerate kinase-like [KO:K11529] [EC:2.7.1.165]
107713503  glycerate kinase isoform X1 [KO:K11529] [EC:2.7.1.165]
107731973  fructose-bisphosphate aldolase C-like [KO:K01623] [EC:4.1.2.13]
107736474  fructose-bisphosphate aldolase A-like [KO:K01623] [EC:4.1.2.13]
107754474  fructose-bisphosphate aldolase B-like [KO:K01623] [EC:4.1.2.13]
107742480  fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
107713203  fructose-bisphosphate aldolase C [KO:K01623] [EC:4.1.2.13]
107720037  fructose-bisphosphate aldolase A-like [KO:K01623] [EC:4.1.2.13]
107714247  fructose-bisphosphate aldolase C-A isoform X1 [KO:K01623] [EC:4.1.2.13]
107754881  fructose-bisphosphate aldolase A-like isoform X1 [KO:K01623] [EC:4.1.2.13]
107708965  fructose-bisphosphate aldolase A isoform X1 [KO:K01623] [EC:4.1.2.13]
107727913  fructose-bisphosphate aldolase C-A-like [KO:K01623] [EC:4.1.2.13]
107738016  fructose-bisphosphate aldolase A-like [KO:K01623] [EC:4.1.2.13]
107755732  fructose-1,6-bisphosphatase isozyme 2-like isoform X1 [KO:K03841] [EC:3.1.3.11]
107718665  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
107727435  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
107727448  fructose-1,6-bisphosphatase isozyme 2-like [KO:K03841] [EC:3.1.3.11]
107757529  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
107724229  ATP-dependent 6-phosphofructokinase, platelet type-like [KO:K00850] [EC:2.7.1.11]
107716200  ATP-dependent 6-phosphofructokinase, muscle type-like [KO:K00850] [EC:2.7.1.11]
107716838  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
107724812  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
107711051  ATP-dependent 6-phosphofructokinase, muscle type-like [KO:K00850] [EC:2.7.1.11]
107739039  ATP-dependent 6-phosphofructokinase, liver type-like [KO:K00850] [EC:2.7.1.11]
107748387  ATP-dependent 6-phosphofructokinase, muscle type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
107713231  pfkl; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
107728386  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
107745467  ATP-dependent 6-phosphofructokinase, muscle type-like [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
srx00010  Glycolysis / Gluconeogenesis
srx00040  Pentose and glucuronate interconversions
srx00052  Galactose metabolism
srx00230  Purine metabolism
srx00240  Pyrimidine metabolism
srx00340  Histidine metabolism
srx00630  Glyoxylate and dicarboxylate metabolism
srx00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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