KEGG   PATHWAY: ssur00020
Entry
ssur00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Serratia surfactantfaciens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ssur00020  Citrate cycle (TCA cycle)
ssur00020

Module
ssur_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ssur00020]
ssur_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ssur00020]
ssur_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ssur00020]
ssur_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ssur00020]
ssur_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ssur00020]
Other DBs
GO: 0006099
Organism
Serratia surfactantfaciens [GN:ssur]
Gene
ATE40_002875  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
ATE40_009940  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
ATE40_017295  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ATE40_006810  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ATE40_002900  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ATE40_002905  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
ATE40_017300  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ATE40_020135  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ATE40_002915  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
ATE40_002910  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
ATE40_002890  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ATE40_002895  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ATE40_002880  succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
ATE40_002885  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
ATE40_022475  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
ATE40_022470  fumarate reductase [KO:K00245] [EC:1.3.5.1]
ATE40_022465  fumarate reductase subunit C [KO:K00246]
ATE40_022460  fumarate reductase [KO:K00247]
ATE40_017355  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ATE40_008185  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
ATE40_022745  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ATE40_004340  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ATE40_007045  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
ATE40_019470  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
ATE40_011755  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
ATE40_017310  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
ATE40_017305  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
ATE40_009680  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ssur00010  Glycolysis / Gluconeogenesis
ssur00053  Ascorbate and aldarate metabolism
ssur00061  Fatty acid biosynthesis
ssur00071  Fatty acid degradation
ssur00190  Oxidative phosphorylation
ssur00220  Arginine biosynthesis
ssur00250  Alanine, aspartate and glutamate metabolism
ssur00280  Valine, leucine and isoleucine degradation
ssur00350  Tyrosine metabolism
ssur00470  D-Amino acid metabolism
ssur00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system