KEGG   PATHWAY: stel00020
Entry
stel00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Stella sp. ATCC 35155
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
stel00020  Citrate cycle (TCA cycle)
stel00020

Module
stel_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:stel00020]
stel_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:stel00020]
stel_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:stel00020]
stel_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:stel00020]
Other DBs
GO: 0006099
Organism
Stella sp. ATCC 35155 [GN:stel]
Gene
STAQ_38400  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
STAQ_23980  citrate synthase [KO:K01647] [EC:2.3.3.1]
STAQ_30160  citrate synthase [KO:K01647] [EC:2.3.3.1]
STAQ_30170  hypothetical protein [KO:K01647] [EC:2.3.3.1]
STAQ_00400  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
STAQ_21460  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
STAQ_43220  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
STAQ_43210  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
STAQ_43200  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STAQ_16280  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STAQ_23710  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STAQ_01950  ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
STAQ_01960  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
STAQ_43230  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
STAQ_43240  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
STAQ_45520  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STAQ_13230  L-aspartate oxidase [KO:K00239] [EC:1.3.5.1]
STAQ_45530  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
STAQ_45500  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
STAQ_45510  hypothetical protein [KO:K00242]
STAQ_49690  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
STAQ_30790  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
STAQ_43250  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
STAQ_24590  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
STAQ_23740  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
STAQ_23730  pdhB; pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
STAQ_23720  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
stel00010  Glycolysis / Gluconeogenesis
stel00053  Ascorbate and aldarate metabolism
stel00061  Fatty acid biosynthesis
stel00071  Fatty acid degradation
stel00190  Oxidative phosphorylation
stel00220  Arginine biosynthesis
stel00250  Alanine, aspartate and glutamate metabolism
stel00280  Valine, leucine and isoleucine degradation
stel00350  Tyrosine metabolism
stel00470  D-Amino acid metabolism
stel00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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