KEGG   PATHWAY: strp00020
Entry
strp00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces sp. PAMC 26508
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
strp00020  Citrate cycle (TCA cycle)
strp00020

Module
strp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:strp00020]
strp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:strp00020]
strp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:strp00020]
strp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:strp00020]
strp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:strp00020]
Other DBs
GO: 0006099
Organism
Streptomyces sp. PAMC 26508 [GN:strp]
Gene
F750_2541  citrate synthase [KO:K01647] [EC:2.3.3.1]
F750_5343  citrate synthase [KO:K01647] [EC:2.3.3.1]
F750_5344  citrate synthase [KO:K01647] [EC:2.3.3.1]
F750_4128  citrate synthase [KO:K01647] [EC:2.3.3.1]
F750_5581  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
F750_5906  isocitrate dehydrogenase [NADP]; Monomeric isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
F750_4808  dihydrolipoamide succinyltransferase component (E2) [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
F750_2038  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
F750_4211  2-oxoglutarate oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
F750_4210  2-oxoglutarate oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
F750_4377  succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
F750_4376  succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
F750_6583  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
F750_4407  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
F750_6584  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
F750_4406  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
F750_6582  succinate dehydrogenase cytochrome b subunit [KO:K00241]
F750_4409  succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
F750_4408  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
F750_4584  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
F750_4583  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
F750_4388  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F750_4521  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
F750_2239  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
F750_2042  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
F750_0079  acetoin dehydrogenase E1 component alpha-subunit [KO:K00161] [EC:1.2.4.1]
F750_0080  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
F750_0081  putative pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
F750_2039  dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
F750_2040  dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
strp00010  Glycolysis / Gluconeogenesis
strp00053  Ascorbate and aldarate metabolism
strp00061  Fatty acid biosynthesis
strp00071  Fatty acid degradation
strp00190  Oxidative phosphorylation
strp00220  Arginine biosynthesis
strp00250  Alanine, aspartate and glutamate metabolism
strp00280  Valine, leucine and isoleucine degradation
strp00350  Tyrosine metabolism
strp00470  D-Amino acid metabolism
strp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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