KEGG   PATHWAY: stt00020
Entry
stt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Typhi Ty2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
stt00020  Citrate cycle (TCA cycle)
stt00020

Module
stt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:stt00020]
stt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:stt00020]
stt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:stt00020]
stt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:stt00020]
stt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:stt00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Typhi Ty2 [GN:stt]
Gene
t2146  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
t1625  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
t0164  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
t1682  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
t2140  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
t2139  sucB; dihydrolipoamide succinyltransferase component [KO:K00658] [EC:2.3.1.61]
t0160  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
t2137  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
t2138  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
t2142  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
t2141  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
t2144  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
t2143  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
t4395  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
t4394  frdB; fumarate reductase, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
t4393  frdC; fumarate reductase complex subunit C [KO:K00246]
t4392  frdD; fumarate reductase complex subunit D [KO:K00247]
t1336  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
t4207  fumB; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
t1337  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
t1256  ydhZ; conserved hypothetical protein [KO:K01675] [EC:4.2.1.2]
t3274  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
t4006  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
t0158  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
t0159  aceF; dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
t1553  probable pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
stt00010  Glycolysis / Gluconeogenesis
stt00053  Ascorbate and aldarate metabolism
stt00061  Fatty acid biosynthesis
stt00071  Fatty acid degradation
stt00190  Oxidative phosphorylation
stt00220  Arginine biosynthesis
stt00250  Alanine, aspartate and glutamate metabolism
stt00280  Valine, leucine and isoleucine degradation
stt00350  Tyrosine metabolism
stt00470  D-Amino acid metabolism
stt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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