KEGG   PATHWAY: stud00020
Entry
stud00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces tubercidicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
stud00020  Citrate cycle (TCA cycle)
stud00020

Module
stud_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:stud00020]
stud_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:stud00020]
stud_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:stud00020]
stud_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:stud00020]
stud_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:stud00020]
Other DBs
GO: 0006099
Organism
Streptomyces tubercidicus [GN:stud]
Gene
STRTU_004624  citrate synthase [KO:K01647] [EC:2.3.3.1]
STRTU_001734  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
STRTU_001735  citrate synthase [KO:K01647] [EC:2.3.3.1]
STRTU_002752  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
STRTU_001565  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
STRTU_006085  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
STRTU_002231  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
STRTU_005223  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STRTU_001516  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STRTU_003944  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
STRTU_003943  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
STRTU_002694  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
STRTU_002695  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
STRTU_005357  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STRTU_002407  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STRTU_002628  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STRTU_005356  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
STRTU_002408  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
STRTU_002629  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
STRTU_005358  succinate dehydrogenase [KO:K00241]
STRTU_002626  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
STRTU_002627  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
STRTU_002429  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
STRTU_002440  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
STRTU_002683  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
STRTU_000675  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
STRTU_002496  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
STRTU_004958  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
STRTU_005220  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
STRTU_005222  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
stud00010  Glycolysis / Gluconeogenesis
stud00053  Ascorbate and aldarate metabolism
stud00061  Fatty acid biosynthesis
stud00071  Fatty acid degradation
stud00190  Oxidative phosphorylation
stud00220  Arginine biosynthesis
stud00250  Alanine, aspartate and glutamate metabolism
stud00280  Valine, leucine and isoleucine degradation
stud00350  Tyrosine metabolism
stud00470  D-Amino acid metabolism
stud00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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