KEGG   PATHWAY: supe00020
Entry
supe00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Superficieibacter sp. HKU1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
supe00020  Citrate cycle (TCA cycle)
supe00020

Module
supe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:supe00020]
supe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:supe00020]
supe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:supe00020]
supe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:supe00020]
supe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:supe00020]
Other DBs
GO: 0006099
Organism
Superficieibacter sp. HKU1 [GN:supe]
Gene
P0H77_07645  citrate synthase [KO:K01647] [EC:2.3.3.1]
P0H77_10110  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
P0H77_04770  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
P0H77_09670  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
P0H77_07670  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
P0H77_07675  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
P0H77_04755  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
P0H77_07685  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
P0H77_07680  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
P0H77_07660  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
P0H77_07665  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
P0H77_07650  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
P0H77_07655  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
P0H77_20705  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
P0H77_20710  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
P0H77_20715  frdC; fumarate reductase subunit FrdC [KO:K00246]
P0H77_20720  frdD; fumarate reductase subunit FrdD [KO:K00247]
P0H77_11590  fumA; class I fumarate hydratase FumA [KO:K01676] [EC:4.2.1.2]
P0H77_11585  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
P0H77_11845  fumD; fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
P0H77_17915  MltR family transcriptional regulator [KO:K01774] [EC:4.2.1.2]
P0H77_02835  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
P0H77_14585  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
P0H77_01990  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
P0H77_04745  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
P0H77_04750  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
P0H77_10550  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
supe00010  Glycolysis / Gluconeogenesis
supe00053  Ascorbate and aldarate metabolism
supe00061  Fatty acid biosynthesis
supe00071  Fatty acid degradation
supe00190  Oxidative phosphorylation
supe00220  Arginine biosynthesis
supe00250  Alanine, aspartate and glutamate metabolism
supe00280  Valine, leucine and isoleucine degradation
supe00350  Tyrosine metabolism
supe00470  D-Amino acid metabolism
supe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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