KEGG   PATHWAY: svp00020
Entry
svp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Stratiformator vulcanicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
svp00020  Citrate cycle (TCA cycle)
svp00020

Module
svp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:svp00020]
svp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:svp00020]
svp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:svp00020]
svp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:svp00020]
svp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:svp00020]
Other DBs
GO: 0006099
Organism
Stratiformator vulcanicus [GN:svp]
Gene
Pan189_16250  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
Pan189_18490  citZ; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
Pan189_28690  acn; Aconitate hydratase precursor [KO:K01681] [EC:4.2.1.3]
Pan189_18000  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Pan189_05120  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Pan189_02780  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
Pan189_15200  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pan189_42800  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pan189_38210  sucD_2; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Pan189_38250  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
Pan189_35600  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Pan189_35610  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Pan189_35590  hypothetical protein [KO:K00241]
Pan189_29900  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Pan189_37540  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Pan189_34350  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
Pan189_40500  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
Pan189_07040  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Pan189_07050  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
svp00010  Glycolysis / Gluconeogenesis
svp00053  Ascorbate and aldarate metabolism
svp00061  Fatty acid biosynthesis
svp00071  Fatty acid degradation
svp00190  Oxidative phosphorylation
svp00220  Arginine biosynthesis
svp00250  Alanine, aspartate and glutamate metabolism
svp00280  Valine, leucine and isoleucine degradation
svp00350  Tyrosine metabolism
svp00470  D-Amino acid metabolism
svp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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