KEGG   PATHWAY: swp00020
Entry
swp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Shewanella piezotolerans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
swp00020  Citrate cycle (TCA cycle)
swp00020

Module
swp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:swp00020]
swp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:swp00020]
swp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:swp00020]
swp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:swp00020]
swp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:swp00020]
Other DBs
GO: 0006099
Organism
Shewanella piezotolerans [GN:swp]
Gene
swp_2957  Citrate synthase I [KO:K01647] [EC:2.3.3.1]
swp_2959  Citrate synthase I fragement, degenerate [KO:K01647] [EC:2.3.3.1]
swp_4740  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
swp_1868  Isocitrate dehydrogenase NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
swp_3606  Isocitrate dehydrogenase NAD-dependent [KO:K00030] [EC:1.1.1.41]
swp_2949  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
swp_2948  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
swp_4749  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
swp_2946  Succinyl-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
swp_2947  Succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
swp_2952  Flavoprotein subunit, putative [KO:K00239] [EC:1.3.5.1]
swp_2950  Succinate dehydrogenase putative iron sulphur subunit [KO:K00240] [EC:1.3.5.1]
swp_2955  Succinate dehydrogenase, cytochrome b subunit [KO:K00241]
swp_2953  Succinate dehydrogenase, hydrophobic subunit, putative [KO:K00242]
swp_0430  Fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
swp_0431  Succinate dehydrogenase/fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
swp_0428  Fumarate reductase cytochrome B subunit [KO:K25996]
swp_0429  Fumarate reductase respiratory complex, transmembrane subunit [KO:K25996]
swp_4352  Flavocytochrome c precursor [KO:K26318] [EC:1.3.2.4]
swp_2633  Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro-lyases tartrate/fumarate beta region [KO:K01676] [EC:4.2.1.2]
swp_4100  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
swp_0182  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
swp_4752  2-oxo-acid dehydrogenase E1 component homodimeric type [KO:K00163] [EC:1.2.4.1]
swp_4751  Dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
swp00010  Glycolysis / Gluconeogenesis
swp00061  Fatty acid biosynthesis
swp00071  Fatty acid degradation
swp00190  Oxidative phosphorylation
swp00220  Arginine biosynthesis
swp00250  Alanine, aspartate and glutamate metabolism
swp00280  Valine, leucine and isoleucine degradation
swp00350  Tyrosine metabolism
swp00470  D-Amino acid metabolism
swp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system