KEGG   PATHWAY: szo00020
Entry
szo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Shinella zoogloeoides
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
szo00020  Citrate cycle (TCA cycle)
szo00020

Module
szo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:szo00020]
szo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:szo00020]
szo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:szo00020]
szo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:szo00020]
Other DBs
GO: 0006099
Organism
Shinella zoogloeoides [GN:szo]
Gene
K8M09_07895  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
K8M09_16490  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
K8M09_08935  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K8M09_15865  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K8M09_15860  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
K8M09_07680  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K8M09_15835  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K8M09_15870  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K8M09_15875  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K8M09_15900  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K8M09_15895  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K8M09_15910  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
K8M09_15905  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
K8M09_09165  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K8M09_15880  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K8M09_16500  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
K8M09_17520  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
K8M09_07660  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
K8M09_07665  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
K8M09_07670  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
szo00010  Glycolysis / Gluconeogenesis
szo00053  Ascorbate and aldarate metabolism
szo00061  Fatty acid biosynthesis
szo00062  Fatty acid elongation
szo00071  Fatty acid degradation
szo00190  Oxidative phosphorylation
szo00220  Arginine biosynthesis
szo00250  Alanine, aspartate and glutamate metabolism
szo00280  Valine, leucine and isoleucine degradation
szo00350  Tyrosine metabolism
szo00470  D-Amino acid metabolism
szo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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