KEGG   PATHWAY: talz00020
Entry
talz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Tardiphaga alba
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
talz00020  Citrate cycle (TCA cycle)
talz00020

Module
talz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:talz00020]
talz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:talz00020]
talz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:talz00020]
talz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:talz00020]
Other DBs
GO: 0006099
Organism
Tardiphaga alba [GN:talz]
Gene
RPMA_16115  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RPMA_00355  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
RPMA_12855  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
RPMA_19955  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RPMA_00585  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
RPMA_00580  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
RPMA_00565  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RPMA_15875  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RPMA_00645  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
RPMA_00650  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
RPMA_01910  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RPMA_01915  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RPMA_01900  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
RPMA_01905  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
RPMA_20480  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
RPMA_09315  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RPMA_00655  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RPMA_20870  transketolase [KO:K00163] [EC:1.2.4.1]
RPMA_15895  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
RPMA_15890  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
RPMA_15880  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
talz00010  Glycolysis / Gluconeogenesis
talz00053  Ascorbate and aldarate metabolism
talz00061  Fatty acid biosynthesis
talz00071  Fatty acid degradation
talz00190  Oxidative phosphorylation
talz00220  Arginine biosynthesis
talz00250  Alanine, aspartate and glutamate metabolism
talz00280  Valine, leucine and isoleucine degradation
talz00350  Tyrosine metabolism
talz00470  D-Amino acid metabolism
talz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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