KEGG   PATHWAY: tant00020
Entry
tant00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Thermus antranikianii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tant00020  Citrate cycle (TCA cycle)
tant00020

Module
tant_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tant00020]
tant_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tant00020]
tant_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tant00020]
tant_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tant00020]
tant_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tant00020]
Other DBs
GO: 0006099
Organism
Thermus antranikianii [GN:tant]
Gene
KNN15_07760  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
KNN15_09370  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KNN15_00810  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KNN15_05540  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KNN15_05545  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KNN15_05380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KNN15_05550  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KNN15_04510  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KNN15_04515  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KNN15_09035  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KNN15_09040  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KNN15_01000  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KNN15_00345  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KNN15_00995  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KNN15_01010  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KNN15_01005  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
KNN15_09130  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KNN15_08515  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KNN15_04580  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KNN15_04730  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KNN15_11520  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KNN15_11515  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
KNN15_04735  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
KNN15_11300  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tant00010  Glycolysis / Gluconeogenesis
tant00061  Fatty acid biosynthesis
tant00071  Fatty acid degradation
tant00190  Oxidative phosphorylation
tant00220  Arginine biosynthesis
tant00250  Alanine, aspartate and glutamate metabolism
tant00280  Valine, leucine and isoleucine degradation
tant00350  Tyrosine metabolism
tant00470  D-Amino acid metabolism
tant00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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