KEGG   PATHWAY: tau00020
Entry
tau00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tolumonas auensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tau00020  Citrate cycle (TCA cycle)
tau00020

Module
tau_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tau00020]
tau_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tau00020]
tau_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tau00020]
tau_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tau00020]
tau_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tau00020]
Other DBs
GO: 0006099
Organism
Tolumonas auensis [GN:tau]
Gene
Tola_2230  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Tola_2562  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Tola_2323  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Tola_2229  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Tola_2228  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Tola_2574  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Tola_1209  pyridine nucleotide-disulphide oxidoreductase dimerisation region [KO:K00382] [EC:1.8.1.4]
Tola_2226  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Tola_2227  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Tola_2490  fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Tola_2491  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
Tola_2492  fumarate reductase subunit C [KO:K00246]
Tola_2493  fumarate reductase D subunit [KO:K00247]
Tola_2552  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Tola_1577  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Tola_2549  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Tola_1513  malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Tola_1847  acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
Tola_1848  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
Tola_0416  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Tola_0419  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Tola_2576  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Tola_2575  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Tola_1996  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tau00010  Glycolysis / Gluconeogenesis
tau00053  Ascorbate and aldarate metabolism
tau00061  Fatty acid biosynthesis
tau00071  Fatty acid degradation
tau00190  Oxidative phosphorylation
tau00220  Arginine biosynthesis
tau00250  Alanine, aspartate and glutamate metabolism
tau00280  Valine, leucine and isoleucine degradation
tau00350  Tyrosine metabolism
tau00470  D-Amino acid metabolism
tau00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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