KEGG   PATHWAY: tcc00020
Entry
tcc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Theobroma cacao (cacao)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tcc00020  Citrate cycle (TCA cycle)
tcc00020

Module
tcc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tcc00020]
tcc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tcc00020]
tcc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tcc00020]
Other DBs
GO: 0006099
Organism
Theobroma cacao (cacao) [GN:tcc]
Gene
18614684  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
18612123  citrate synthase 3, peroxisomal [KO:K01647] [EC:2.3.3.1]
18613719  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
18609504  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
18603655  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
18600621  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
18610098  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
18610706  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
18593495  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
18593492  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
18600801  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [KO:K00031] [EC:1.1.1.42]
18600670  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
18595004  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
18610664  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
18607405  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
18597974  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
18586143  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
18586144  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
18593470  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
18597180  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [KO:K00658] [EC:2.3.1.61]
18603617  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
18603721  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
18608485  probable succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
18613097  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
18610944  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
18611586  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
18600921  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
18613624  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
18614398  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
18603218  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
18607305  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18611372  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18604702  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
18594136  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18596725  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18611387  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
18591873  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
18609342  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
18613891  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
18605171  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
18608889  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
18596485  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
18610503  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
18596173  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
18592930  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
18586597  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tcc00010  Glycolysis / Gluconeogenesis
tcc00053  Ascorbate and aldarate metabolism
tcc00061  Fatty acid biosynthesis
tcc00062  Fatty acid elongation
tcc00071  Fatty acid degradation
tcc00190  Oxidative phosphorylation
tcc00220  Arginine biosynthesis
tcc00250  Alanine, aspartate and glutamate metabolism
tcc00280  Valine, leucine and isoleucine degradation
tcc00350  Tyrosine metabolism
tcc00470  D-Amino acid metabolism
tcc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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