KEGG   PATHWAY: tct00020
Entry
tct00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudoduganella chitinolytica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tct00020  Citrate cycle (TCA cycle)
tct00020

Module
tct_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tct00020]
tct_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tct00020]
tct_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tct00020]
tct_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tct00020]
tct_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tct00020]
Other DBs
GO: 0006099
Organism
Pseudoduganella chitinolytica [GN:tct]
Gene
PX653_01415  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PX653_01365  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PX653_13095  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PX653_13105  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PX653_01495  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PX653_01500  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PX653_01510  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PX653_22475  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PX653_27390  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PX653_18520  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PX653_18525  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PX653_01315  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
PX653_01400  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PX653_01405  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PX653_01390  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PX653_01395  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
PX653_14595  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
PX653_13945  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PX653_01380  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PX653_22660  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
PX653_27380  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
PX653_27385  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tct00010  Glycolysis / Gluconeogenesis
tct00053  Ascorbate and aldarate metabolism
tct00061  Fatty acid biosynthesis
tct00071  Fatty acid degradation
tct00190  Oxidative phosphorylation
tct00220  Arginine biosynthesis
tct00250  Alanine, aspartate and glutamate metabolism
tct00280  Valine, leucine and isoleucine degradation
tct00350  Tyrosine metabolism
tct00470  D-Amino acid metabolism
tct00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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