KEGG   PATHWAY: tgl00020
Entry
tgl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thalassovita gelatinovora
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tgl00020  Citrate cycle (TCA cycle)
tgl00020

Module
tgl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tgl00020]
tgl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tgl00020]
tgl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tgl00020]
tgl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tgl00020]
tgl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tgl00020]
Other DBs
GO: 0006099
Organism
Thalassovita gelatinovora [GN:tgl]
Gene
HFZ77_02125  citrate synthase [KO:K01647] [EC:2.3.3.1]
HFZ77_01515  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HFZ77_00695  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HFZ77_02840  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HFZ77_08455  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HFZ77_08460  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HFZ77_02900  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HFZ77_08470  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HFZ77_08445  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HFZ77_08440  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HFZ77_08385  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HFZ77_08375  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HFZ77_08395  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HFZ77_08390  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HFZ77_00850  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HFZ77_08425  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HFZ77_18275  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
HFZ77_13965  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HFZ77_05785  transketolase [KO:K00163] [EC:1.2.4.1]
HFZ77_03050  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HFZ77_03055  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
HFZ77_03060  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
HFZ77_16955  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tgl00010  Glycolysis / Gluconeogenesis
tgl00053  Ascorbate and aldarate metabolism
tgl00061  Fatty acid biosynthesis
tgl00071  Fatty acid degradation
tgl00190  Oxidative phosphorylation
tgl00220  Arginine biosynthesis
tgl00250  Alanine, aspartate and glutamate metabolism
tgl00280  Valine, leucine and isoleucine degradation
tgl00350  Tyrosine metabolism
tgl00470  D-Amino acid metabolism
tgl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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