KEGG   PATHWAY: thin00020
Entry
thin00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Thioglobus sp. NP1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
thin00020  Citrate cycle (TCA cycle)
thin00020

Module
thin_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:thin00020]
thin_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:thin00020]
thin_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:thin00020]
thin_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:thin00020]
Other DBs
GO: 0006099
Organism
Candidatus Thioglobus sp. NP1 [GN:thin]
Gene
CRN91_01210  citrate synthase [KO:K01647] [EC:2.3.3.1]
CRN91_02530  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CRN91_07050  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CRN91_04700  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CRN91_04695  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CRN91_02690  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CRN91_00330  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CRN91_00325  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CRN91_07920  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CRN91_07915  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CRN91_07925  hypothetical protein [KO:K00241]
CRN91_07780  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CRN91_07910  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CRN91_00420  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CRN91_06620  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CRN91_02695  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
thin00010  Glycolysis / Gluconeogenesis
thin00053  Ascorbate and aldarate metabolism
thin00061  Fatty acid biosynthesis
thin00071  Fatty acid degradation
thin00190  Oxidative phosphorylation
thin00220  Arginine biosynthesis
thin00250  Alanine, aspartate and glutamate metabolism
thin00280  Valine, leucine and isoleucine degradation
thin00350  Tyrosine metabolism
thin00470  D-Amino acid metabolism
thin00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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