KEGG   PATHWAY: tmd00020
Entry
tmd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thalassovita mediterranea
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tmd00020  Citrate cycle (TCA cycle)
tmd00020

Module
tmd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tmd00020]
tmd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tmd00020]
tmd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tmd00020]
tmd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tmd00020]
Other DBs
GO: 0006099
Organism
Thalassovita mediterranea [GN:tmd]
Gene
KUV46_13535  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KUV46_03835  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KUV46_08645  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KUV46_05550  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KUV46_05545  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KUV46_03985  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KUV46_06795  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KUV46_13435  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KUV46_05555  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KUV46_05560  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KUV46_05655  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KUV46_05645  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KUV46_05665  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KUV46_05660  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KUV46_02805  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KUV46_11225  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KUV46_00540  transketolase [KO:K00163] [EC:1.2.4.1]
KUV46_13455  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KUV46_13450  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
KUV46_13440  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tmd00010  Glycolysis / Gluconeogenesis
tmd00053  Ascorbate and aldarate metabolism
tmd00061  Fatty acid biosynthesis
tmd00071  Fatty acid degradation
tmd00190  Oxidative phosphorylation
tmd00220  Arginine biosynthesis
tmd00250  Alanine, aspartate and glutamate metabolism
tmd00280  Valine, leucine and isoleucine degradation
tmd00350  Tyrosine metabolism
tmd00470  D-Amino acid metabolism
tmd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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