KEGG   PATHWAY: toe00020
Entry
toe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Trabulsiella odontotermitis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
toe00020  Citrate cycle (TCA cycle)
toe00020

Module
toe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:toe00020]
toe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:toe00020]
toe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:toe00020]
toe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:toe00020]
toe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:toe00020]
Other DBs
GO: 0006099
Organism
Trabulsiella odontotermitis [GN:toe]
Gene
QMG90_14815  citrate synthase [KO:K01647] [EC:2.3.3.1]
QMG90_10450  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QMG90_17615  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
QMG90_09890  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QMG90_14790  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QMG90_14785  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QMG90_17625  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QMG90_14775  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QMG90_14780  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QMG90_14800  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QMG90_14795  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
QMG90_14810  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
QMG90_14805  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
QMG90_20070  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
QMG90_20075  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
QMG90_20080  frdC; fumarate reductase subunit FrdC [KO:K00246]
QMG90_20085  frdD; fumarate reductase subunit FrdD [KO:K00247]
QMG90_08995  fumA; class I fumarate hydratase FumA [KO:K01676] [EC:4.2.1.2]
QMG90_11575  fumA; class I fumarate hydratase FumA [KO:K01676] [EC:4.2.1.2]
QMG90_13545  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
QMG90_13550  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
QMG90_11570  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QMG90_02165  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QMG90_07830  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
QMG90_11150  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
QMG90_01310  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
QMG90_17635  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
QMG90_17630  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
QMG90_10660  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
toe00010  Glycolysis / Gluconeogenesis
toe00053  Ascorbate and aldarate metabolism
toe00061  Fatty acid biosynthesis
toe00071  Fatty acid degradation
toe00190  Oxidative phosphorylation
toe00220  Arginine biosynthesis
toe00250  Alanine, aspartate and glutamate metabolism
toe00280  Valine, leucine and isoleucine degradation
toe00350  Tyrosine metabolism
toe00470  D-Amino acid metabolism
toe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system