KEGG   PATHWAY: try00020
Entry
try00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tropicibacter oceani
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
try00020  Citrate cycle (TCA cycle)
try00020

Module
try_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:try00020]
try_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:try00020]
try_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:try00020]
try_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:try00020]
try_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:try00020]
Other DBs
GO: 0006099
Organism
Tropicibacter oceani [GN:try]
Gene
QF118_02525  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
QF118_14625  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
QF118_15165  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QF118_01715  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QF118_13270  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QF118_18730  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QF118_18735  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QF118_01125  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QF118_14925  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QF118_18750  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QF118_18720  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QF118_18715  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QF118_18655  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QF118_18640  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QF118_18665  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
QF118_18660  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
QF118_12380  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QF118_18700  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QF118_09655  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
QF118_06405  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
QF118_01135  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
QF118_11285  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
QF118_11275  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
QF118_19420  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00162] [EC:1.2.4.1]
QF118_01130  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
QF118_11265  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
QF118_19425  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
try00010  Glycolysis / Gluconeogenesis
try00053  Ascorbate and aldarate metabolism
try00061  Fatty acid biosynthesis
try00071  Fatty acid degradation
try00190  Oxidative phosphorylation
try00220  Arginine biosynthesis
try00250  Alanine, aspartate and glutamate metabolism
try00280  Valine, leucine and isoleucine degradation
try00350  Tyrosine metabolism
try00470  D-Amino acid metabolism
try00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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