KEGG   PATHWAY: tth00020
Entry
tth00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermus thermophilus HB27
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tth00020  Citrate cycle (TCA cycle)
tth00020

Module
tth_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tth00020]
tth_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tth00020]
tth_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tth00020]
tth_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tth00020]
tth_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tth00020]
Other DBs
GO: 0006099
Organism
Thermus thermophilus HB27 [GN:tth]
Gene
TT_C0978  citrate synthase [KO:K01647] [EC:2.3.3.1]
TT_C0374  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
TT_C1172  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
TT_C1698  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
TT_C1699  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
TT_C1700  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TT_C1753  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TT_C1591  2-oxoacid-ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TT_C1592  2-oxoacid-ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TT_C0169  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
TT_C0170  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
TT_C1090  succinate dehydrogenase flavoprotein subunit-like protein [KO:K00239] [EC:1.3.5.1]
TT_C1089  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
TT_C1092  succinate dehydrogenase membrane anchor subunit [KO:K00241]
TT_C1091  putative membrane anchor of succinate dehydrogenase [KO:K00242]
TT_C0190  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
TT_C0168  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TT_C1709  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
TT_C1801  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
TT_C0569  pyruvate decarboxylase alpha subunit-like protein [KO:K00161] [EC:1.2.4.1]
TT_C0568  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
TT_C1802  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tth00010  Glycolysis / Gluconeogenesis
tth00061  Fatty acid biosynthesis
tth00071  Fatty acid degradation
tth00190  Oxidative phosphorylation
tth00220  Arginine biosynthesis
tth00250  Alanine, aspartate and glutamate metabolism
tth00280  Valine, leucine and isoleucine degradation
tth00350  Tyrosine metabolism
tth00470  D-Amino acid metabolism
tth00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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