KEGG   PATHWAY: tvc00030
Entry
tvc00030                    Pathway                                
Name
Pentose phosphate pathway - Tachysurus vachellii
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tvc00030  Pentose phosphate pathway
tvc00030

Module
tvc_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:tvc00030]
tvc_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:tvc00030]
tvc_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:tvc00030]
tvc_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:tvc00030]
Other DBs
GO: 0006098
Organism
Tachysurus vachellii [GN:tvc]
Gene
132856776  gpia; glucose-6-phosphate isomerase a [KO:K01810] [EC:5.3.1.9]
132851430  gpib; glucose-6-phosphate isomerase b [KO:K01810] [EC:5.3.1.9]
132862219  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
132862832  glucose-6-phosphate 1-dehydrogenase-like isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
132864077  pgls; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
132844575  h6pd; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
132861958  pgd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
132849882  rpe; ribulose-phosphate 3-epimerase isoform X1 [KO:K01783] [EC:5.1.3.1]
132861924  tktb; transketolase-like protein 2 [KO:K00615] [EC:2.2.1.1]
132845352  LOW QUALITY PROTEIN: transketolase-like [KO:K00615] [EC:2.2.1.1]
132853498  transketolase-like [KO:K00615] [EC:2.2.1.1]
132851788  taldo1; transaldolase [KO:K00616] [EC:2.2.1.2]
132847192  rpia; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
132840712  shpk; sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
132859155  dera; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
132852153  rbks; ribokinase [KO:K00852] [EC:2.7.1.15]
132847831  phosphoglucomutase-1-like [KO:K01835] [EC:5.4.2.2]
132844307  pgm1; phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
132841959  pgm2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
132856049  prps1b; ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
132839140  ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
132840717  prps1a; ribose-phosphate pyrophosphokinase 1a isoform X1 [KO:K00948] [EC:2.7.6.1]
132844934  rgn; regucalcin [KO:K01053] [EC:3.1.1.17]
132844670  glyctk; glycerate kinase [KO:K11529] [EC:2.7.1.165]
132841545  aldoab; aldolase a, fructose-bisphosphate, b [KO:K01623] [EC:4.1.2.13]
132855733  aldob; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
132857922  aldoca; fructose-bisphosphate aldolase C-A [KO:K01623] [EC:4.1.2.13]
132859776  aldocb; fructose-bisphosphate aldolase C-B [KO:K01623] [EC:4.1.2.13]
132854377  fbp1a; fructose-1,6-bisphosphatase 1a [KO:K03841] [EC:3.1.3.11]
132854681  fbp2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
132855119  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
132855775  pfklb; phosphofructokinase, liver b [KO:K00850] [EC:2.7.1.11]
132850364  pfkla; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
132862476  pfkma; phosphofructokinase, muscle a [KO:K00850] [EC:2.7.1.11]
132845531  pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
tvc00010  Glycolysis / Gluconeogenesis
tvc00040  Pentose and glucuronate interconversions
tvc00052  Galactose metabolism
tvc00230  Purine metabolism
tvc00240  Pyrimidine metabolism
tvc00340  Histidine metabolism
tvc00630  Glyoxylate and dicarboxylate metabolism
tvc00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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