KEGG   PATHWAY: tvr00020
Entry
tvr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thioalkalivibrio versutus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tvr00020  Citrate cycle (TCA cycle)
tvr00020

Module
tvr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tvr00020]
tvr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tvr00020]
tvr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tvr00020]
tvr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tvr00020]
Other DBs
GO: 0006099
Organism
Thioalkalivibrio versutus [GN:tvr]
Gene
TVD_07495  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
TVD_06775  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
TVD_06755  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
TVD_13145  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
TVD_13140  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
TVD_10160  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
TVD_12040  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TVD_11330  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
TVD_11335  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
TVD_08050  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
TVD_08040  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
TVD_08060  succinate dehydrogenase [KO:K00241]
TVD_08055  succinate dehydrogenase [KO:K00242]
TVD_06795  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
TVD_12750  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TVD_08555  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
TVD_08560  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
TVD_12050  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
TVD_12045  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tvr00010  Glycolysis / Gluconeogenesis
tvr00053  Ascorbate and aldarate metabolism
tvr00061  Fatty acid biosynthesis
tvr00071  Fatty acid degradation
tvr00190  Oxidative phosphorylation
tvr00220  Arginine biosynthesis
tvr00250  Alanine, aspartate and glutamate metabolism
tvr00280  Valine, leucine and isoleucine degradation
tvr00350  Tyrosine metabolism
tvr00470  D-Amino acid metabolism
tvr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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