KEGG   PATHWAY: txi00020
Entry
txi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thalassospira xiamenensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
txi00020  Citrate cycle (TCA cycle)
txi00020

Module
txi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:txi00020]
txi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:txi00020]
txi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:txi00020]
txi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:txi00020]
txi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:txi00020]
Other DBs
GO: 0006099
Organism
Thalassospira xiamenensis [GN:txi]
Gene
TH3_10430  citrate synthase [KO:K01647] [EC:2.3.3.1]
TH3_08255  citrate synthase [KO:K01647] [EC:2.3.3.1]
TH3_19505  citrate synthase [KO:K01647] [EC:2.3.3.1]
TH3_17195  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
TH3_04170  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
TH3_01290  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
TH3_01285  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
TH3_01280  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TH3_10310  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
TH3_01295  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
TH3_01300  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
TH3_18430  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
TH3_18425  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
TH3_18440  succinate dehydrogenase, cytochrome b subunit [KO:K00241]
TH3_18435  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
TH3_05295  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
TH3_03210  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
TH3_01305  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TH3_17895  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
TH3_00565  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
TH3_18165  transketolase central region [KO:K00163] [EC:1.2.4.1]
TH3_10325  pyruvate dehydrogenase (Acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
TH3_10320  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
TH3_10315  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
txi00010  Glycolysis / Gluconeogenesis
txi00053  Ascorbate and aldarate metabolism
txi00061  Fatty acid biosynthesis
txi00071  Fatty acid degradation
txi00190  Oxidative phosphorylation
txi00220  Arginine biosynthesis
txi00250  Alanine, aspartate and glutamate metabolism
txi00280  Valine, leucine and isoleucine degradation
txi00350  Tyrosine metabolism
txi00470  D-Amino acid metabolism
txi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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