KEGG   PATHWAY: und00020
Entry
und00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Undibacterium sp. KW1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
und00020  Citrate cycle (TCA cycle)
und00020

Module
und_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:und00020]
und_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:und00020]
und_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:und00020]
und_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:und00020]
und_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:und00020]
Other DBs
GO: 0006099
Organism
Undibacterium sp. KW1 [GN:und]
Gene
UNDKW_5148  hypothetical protein [KO:K01647] [EC:2.3.3.1]
UNDKW_2721  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
UNDKW_2731  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
UNDKW_1782  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
UNDKW_2720  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
UNDKW_2719  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
UNDKW_1321  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
UNDKW_2717  odhL; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
UNDKW_0625  sucD; Succinate-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
UNDKW_0624  sucC; Succinate-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
UNDKW_2724  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
UNDKW_2723  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
UNDKW_2726  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
UNDKW_2725  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
UNDKW_2355  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
UNDKW_4423  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
UNDKW_2728  mdH; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
UNDKW_5606  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
UNDKW_1319  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
UNDKW_1320  phdB; acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
und00010  Glycolysis / Gluconeogenesis
und00053  Ascorbate and aldarate metabolism
und00061  Fatty acid biosynthesis
und00071  Fatty acid degradation
und00190  Oxidative phosphorylation
und00220  Arginine biosynthesis
und00250  Alanine, aspartate and glutamate metabolism
und00280  Valine, leucine and isoleucine degradation
und00350  Tyrosine metabolism
und00470  D-Amino acid metabolism
und00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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