KEGG   PATHWAY: vas03430
Entry
vas03430                    Pathway                                
Name
Mismatch repair - Vibrio astriarenae
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
vas03430  Mismatch repair
vas03430

Other DBs
GO: 0006298
Organism
Vibrio astriarenae [GN:vas]
Gene
GT360_12330  mutS; DNA mismatch repair protein MutS [KO:K03555]
GT360_13005  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
GT360_11470  mutH; DNA mismatch repair endonuclease MutH [KO:K03573]
GT360_00600  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
GT360_07590  sbcB; exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
GT360_03240  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
GT360_03720  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
GT360_12115  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
GT360_12705  ssb; single-stranded DNA-binding protein [KO:K03111]
GT360_10835  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
GT360_00005  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
GT360_09975  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
GT360_03960  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
GT360_04835  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
GT360_01355  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
GT360_05585  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
GT360_08870  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
GT360_10770  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
GT360_17945  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
GT360_19650  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
GT360_21500  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
GT360_12075  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
GT360_11525  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
GT360_04055  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
GT360_13280  Dam family site-specific DNA-(adenine-N6)-methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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