KEGG   PATHWAY: vau00020
Entry
vau00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio anguillarum NB10
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vau00020  Citrate cycle (TCA cycle)
vau00020

Module
vau_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vau00020]
vau_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vau00020]
vau_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vau00020]
vau_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vau00020]
vau_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vau00020]
Other DBs
GO: 0006099
Organism
Vibrio anguillarum NB10 [GN:vau]
Gene
VANGNB10_cI1902  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
VANGNB10_cI0501  acnB; aconitate hydratase 2 (citrate hydro-lyase 2) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
VANGNB10_cI1076  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
VANGNB10_cI1897c  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
VANGNB10_cI1896c  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
VANGNB10_cI2392  pyridine nucleotide-disulfide oxidoreductase,class I [KO:K00382] [EC:1.8.1.4]
VANGNB10_cI0483  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
VANGNB10_cI1894c  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
VANGNB10_cI1895c  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
VANGNB10_cI1899c  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
VANGNB10_cI1898c  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
VANGNB10_cI1901c  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
VANGNB10_cI1900c  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
VANGNB10_cI2406  sdhA_frdA; Succinate dehydrogenase/fumarate reductase,flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
VANGNB10_cI2407  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
VANGNB10_cI2408  frdC; Fumarate reductase complex, membrane anchor subunit C [KO:K00246]
VANGNB10_cI2409  frdD; fumarate reductase complex, membrane anchor subunit D [KO:K00247]
VANGNB10_cI1392c  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
VANGNB10_cI0308  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
VANGNB10_cI0151c  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
VANGNB10_cI0481  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
VANGNB10_cI0482  aceF; pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vau00010  Glycolysis / Gluconeogenesis
vau00053  Ascorbate and aldarate metabolism
vau00061  Fatty acid biosynthesis
vau00071  Fatty acid degradation
vau00190  Oxidative phosphorylation
vau00220  Arginine biosynthesis
vau00250  Alanine, aspartate and glutamate metabolism
vau00280  Valine, leucine and isoleucine degradation
vau00350  Tyrosine metabolism
vau00470  D-Amino acid metabolism
vau00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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