KEGG   PATHWAY: vcq00020
Entry
vcq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio cholerae O1 2012EL-2176
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vcq00020  Citrate cycle (TCA cycle)
vcq00020

Module
vcq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vcq00020]
vcq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vcq00020]
vcq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vcq00020]
vcq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vcq00020]
vcq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vcq00020]
Other DBs
GO: 0006099
Organism
Vibrio cholerae O1 2012EL-2176 [GN:vcq]
Gene
EN18_13555  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
EN18_05970  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EN18_09025  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EN18_13530  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
EN18_13525  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
EN18_16220  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EN18_15095  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EN18_13515  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
EN18_13520  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
EN18_13540  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
EN18_13535  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
EN18_13550  succinate dehydrogenase [KO:K00241]
EN18_13545  sdhD; succinate dehydrogenase [KO:K00242]
EN18_16290  fumarate reductase [KO:K00244] [EC:1.3.5.1]
EN18_16295  fumarate reductase [KO:K00245] [EC:1.3.5.1]
EN18_16300  fumarate reductase [KO:K00246]
EN18_16305  fumarate reductase [KO:K00247]
EN18_09805  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EN18_11045  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
EN18_19150  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EN18_16685  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EN18_15105  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
EN18_15100  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
EN18_01070  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vcq00010  Glycolysis / Gluconeogenesis
vcq00053  Ascorbate and aldarate metabolism
vcq00061  Fatty acid biosynthesis
vcq00071  Fatty acid degradation
vcq00190  Oxidative phosphorylation
vcq00220  Arginine biosynthesis
vcq00250  Alanine, aspartate and glutamate metabolism
vcq00280  Valine, leucine and isoleucine degradation
vcq00350  Tyrosine metabolism
vcq00470  D-Amino acid metabolism
vcq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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