KEGG   PATHWAY: vei00020
Entry
vei00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Verminephrobacter eiseniae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vei00020  Citrate cycle (TCA cycle)
vei00020

Module
vei_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vei00020]
vei_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vei00020]
vei_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vei00020]
vei_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vei00020]
Other DBs
GO: 0006099
Organism
Verminephrobacter eiseniae [GN:vei]
Gene
Veis_2009  citrate synthase [KO:K01647] [EC:2.3.3.1]
Veis_4350  citrate synthase [KO:K01647] [EC:2.3.3.1]
Veis_1400  citrate synthase [KO:K01647] [EC:2.3.3.1]
Veis_4677  conserved hypothetical protein [KO:K01647] [EC:2.3.3.1]
Veis_1342  aconitase [KO:K01681] [EC:4.2.1.3]
Veis_4358  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Veis_0624  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Veis_3979  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Veis_3978  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
Veis_1917  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Veis_3977  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Veis_2729  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Veis_2730  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Veis_4352  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Veis_4351  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Veis_4354  succinate dehydrogenase subunit C [KO:K00241]
Veis_4353  succinate dehydrogenase subunit D [KO:K00242]
Veis_2512  Succinate dehydrogenase [KO:K00244] [EC:1.3.5.1]
Veis_2515  succinate dehydrogenase subunit B [KO:K00245] [EC:1.3.5.1]
Veis_2514  conserved hypothetical protein [KO:K00246]
Veis_2513  succinate dehydrogenase, cytochrome b subunit [KO:K00247]
Veis_3214  fumarase [KO:K01676] [EC:4.2.1.2]
Veis_3057  fumarase alpha subunit [KO:K01677] [EC:4.2.1.2]
Veis_3058  fumarate hydratase class I beta subunit [KO:K01678] [EC:4.2.1.2]
Veis_3215  fumarase [KO:K01679] [EC:4.2.1.2]
Veis_4596  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Veis_4356  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Veis_1919  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Veis_1918  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vei00010  Glycolysis / Gluconeogenesis
vei00053  Ascorbate and aldarate metabolism
vei00061  Fatty acid biosynthesis
vei00071  Fatty acid degradation
vei00190  Oxidative phosphorylation
vei00220  Arginine biosynthesis
vei00250  Alanine, aspartate and glutamate metabolism
vei00280  Valine, leucine and isoleucine degradation
vei00350  Tyrosine metabolism
vei00470  D-Amino acid metabolism
vei00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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