KEGG   PATHWAY: vfl00020
Entry
vfl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio fluvialis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vfl00020  Citrate cycle (TCA cycle)
vfl00020

Module
vfl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vfl00020]
vfl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vfl00020]
vfl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vfl00020]
vfl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vfl00020]
vfl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vfl00020]
Other DBs
GO: 0006099
Organism
Vibrio fluvialis [GN:vfl]
Gene
AL536_10005  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AL536_08295  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AL536_12035  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AL536_10030  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AL536_10035  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
AL536_08215  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AL536_11205  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AL536_11210  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AL536_10045  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AL536_10040  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AL536_10020  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AL536_10025  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AL536_10010  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
AL536_10015  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
AL536_21725  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
AL536_21720  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
AL536_21715  fumarate reductase subunit FrdC [KO:K00246]
AL536_21710  fumarate reductase subunit FrdD [KO:K00247]
AL536_12925  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AL536_12390  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AL536_18645  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AL536_21250  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AL536_08205  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AL536_08210  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vfl00010  Glycolysis / Gluconeogenesis
vfl00053  Ascorbate and aldarate metabolism
vfl00061  Fatty acid biosynthesis
vfl00071  Fatty acid degradation
vfl00190  Oxidative phosphorylation
vfl00220  Arginine biosynthesis
vfl00250  Alanine, aspartate and glutamate metabolism
vfl00280  Valine, leucine and isoleucine degradation
vfl00350  Tyrosine metabolism
vfl00470  D-Amino acid metabolism
vfl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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