KEGG   PATHWAY: vit00020
Entry
vit00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vitreoscilla sp. C1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vit00020  Citrate cycle (TCA cycle)
vit00020

Module
vit_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vit00020]
vit_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vit00020]
vit_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vit00020]
vit_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vit00020]
Other DBs
GO: 0006099
Organism
Vitreoscilla sp. C1 [GN:vit]
Gene
ADP71_26190  citrate synthase [KO:K01647] [EC:2.3.3.1]
ADP71_19240  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ADP71_16620  NADP isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ADP71_26180  subunit E1 of 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
ADP71_26160  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
ADP71_26560  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ADP71_19400  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
ADP71_26130  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ADP71_26110  subunit alpha of ADP-forming succinyl-CoA synthetase [KO:K01902] [EC:6.2.1.5]
ADP71_26120  subunit beta of ADP-forming succinyl-CoA synthetase [KO:K01903] [EC:6.2.1.5]
ADP71_10000  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
ADP71_26220  flavoprotein subunit of succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
ADP71_26210  iron-sulfur subunit of succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
ADP71_26250  cytochrome b subunit of succinate dehydrogenase [KO:K00241]
ADP71_26240  hydrophobic membrane anchor subunit of succinate dehydrogenase [KO:K00242]
ADP71_19630  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ADP71_20190  class 2 fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ADP71_26270  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ADP71_19450  E1 subunit of pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
ADP71_19440  dihydrolipoyllysine-residue acetyltransferase subunit of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vit00010  Glycolysis / Gluconeogenesis
vit00061  Fatty acid biosynthesis
vit00071  Fatty acid degradation
vit00190  Oxidative phosphorylation
vit00220  Arginine biosynthesis
vit00250  Alanine, aspartate and glutamate metabolism
vit00280  Valine, leucine and isoleucine degradation
vit00350  Tyrosine metabolism
vit00470  D-Amino acid metabolism
vit00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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