KEGG   PATHWAY: vow00020
Entry
vow00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio owensii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vow00020  Citrate cycle (TCA cycle)
vow00020

Module
vow_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vow00020]
vow_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vow00020]
vow_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vow00020]
vow_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vow00020]
vow_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vow00020]
Other DBs
GO: 0006099
Organism
Vibrio owensii [GN:vow]
Gene
A9237_04080  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A9237_11435  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A9237_03260  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
A9237_04055  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A9237_04050  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A9237_09940  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9237_11340  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9237_04040  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A9237_04045  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A9237_04065  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A9237_04060  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A9237_04075  succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
A9237_04070  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
A9237_09470  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
A9237_09465  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
A9237_09460  fumarate reductase subunit C [KO:K00246]
A9237_09455  fumarate reductase subunit D [KO:K00247]
A9237_14905  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A9237_09320  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
A9237_23255  transcriptional regulator [KO:K01774] [EC:4.2.1.2]
A9237_06605  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A9237_07580  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A9237_11330  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A9237_11335  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vow00010  Glycolysis / Gluconeogenesis
vow00053  Ascorbate and aldarate metabolism
vow00061  Fatty acid biosynthesis
vow00071  Fatty acid degradation
vow00190  Oxidative phosphorylation
vow00220  Arginine biosynthesis
vow00250  Alanine, aspartate and glutamate metabolism
vow00280  Valine, leucine and isoleucine degradation
vow00350  Tyrosine metabolism
vow00470  D-Amino acid metabolism
vow00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system