KEGG   PATHWAY: vri00010
Entry
vri00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Vitis riparia (riverbank grape)
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vri00010  Glycolysis / Gluconeogenesis
vri00010

Module
vri_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:vri00010]
vri_M00002  Glycolysis, core module involving three-carbon compounds [PATH:vri00010]
vri_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vri00010]
vri_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vri00010]
Other DBs
GO: 0006096 0006094
Organism
Vitis riparia (riverbank grape) [GN:vri]
Gene
117921685  hexokinase-2-like [KO:K00844] [EC:2.7.1.1]
117925691  hexokinase-1 isoform X1 [KO:K00844] [EC:2.7.1.1]
117916505  hexokinase-3-like [KO:K00844] [EC:2.7.1.1]
117906935  hexokinase-2, chloroplastic [KO:K00844] [EC:2.7.1.1]
117919136  probable hexokinase-like 2 protein [KO:K00844] [EC:2.7.1.1]
117906499  glucose-6-phosphate isomerase, cytosolic [KO:K01810] [EC:5.3.1.9]
117906609  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
117933546  ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X1 [KO:K00850] [EC:2.7.1.11]
117923756  ATP-dependent 6-phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
117912746  ATP-dependent 6-phosphofructokinase 6 [KO:K00850] [EC:2.7.1.11]
117925246  ATP-dependent 6-phosphofructokinase 3-like [KO:K00850] [EC:2.7.1.11]
117929702  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
117919188  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
117923545  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [KO:K00895] [EC:2.7.1.90]
117927054  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like [KO:K00895] [EC:2.7.1.90]
117906805  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [KO:K00895] [EC:2.7.1.90]
117909601  LOW QUALITY PROTEIN: fructose-1,6-bisphosphatase, chloroplastic-like [KO:K03841] [EC:3.1.3.11]
117909739  LOW QUALITY PROTEIN: fructose-1,6-bisphosphatase, chloroplastic-like [KO:K03841] [EC:3.1.3.11]
117920933  fructose-1,6-bisphosphatase, chloroplastic-like [KO:K03841] [EC:3.1.3.11]
117910649  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
117907603  fructose-1,6-bisphosphatase, cytosolic-like [KO:K03841] [EC:3.1.3.11]
117919547  fructose-1,6-bisphosphatase, chloroplastic-like isoform X1 [KO:K03841] [EC:3.1.3.11]
117909647  fructose-bisphosphate aldolase, cytoplasmic isozyme 1 [KO:K01623] [EC:4.1.2.13]
117911143  fructose-bisphosphate aldolase 1, chloroplastic-like [KO:K01623] [EC:4.1.2.13]
117912516  fructose-bisphosphate aldolase 1, chloroplastic isoform X1 [KO:K01623] [EC:4.1.2.13]
117918099  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
117920418  fructose-bisphosphate aldolase 1, cytoplasmic [KO:K01623] [EC:4.1.2.13]
117921849  LOW QUALITY PROTEIN: triosephosphate isomerase, chloroplastic-like [KO:K01803] [EC:5.3.1.1]
117911240  triosephosphate isomerase, chloroplastic isoform X1 [KO:K01803] [EC:5.3.1.1]
117916681  triosephosphate isomerase, cytosolic [KO:K01803] [EC:5.3.1.1]
117928950  triosephosphate isomerase, cytosolic [KO:K01803] [EC:5.3.1.1]
117929219  triosephosphate isomerase, cytosolic-like [KO:K01803] [EC:5.3.1.1]
117924318  glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like isoform X1 [KO:K00134] [EC:1.2.1.12]
117904458  glyceraldehyde-3-phosphate dehydrogenase, cytosolic [KO:K00134] [EC:1.2.1.12]
117929906  glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic-like [KO:K00134] [EC:1.2.1.12]
117908364  LOW QUALITY PROTEIN: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic-like [KO:K00134] [EC:1.2.1.12]
117909096  glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic-like [KO:K00134] [EC:1.2.1.12]
117919860  phosphoglycerate kinase-like [KO:K00927] [EC:2.7.2.3]
117909066  phosphoglycerate kinase, chloroplastic [KO:K00927] [EC:2.7.2.3]
117909161  phosphoglycerate kinase, cytosolic [KO:K00927] [EC:2.7.2.3]
117905335  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
117917257  phosphoglycerate mutase-like protein 4 [KO:K15634] [EC:5.4.2.11]
117920314  2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
117933858  enolase [KO:K01689] [EC:4.2.1.11]
117904423  enolase 1, chloroplastic [KO:K01689] [EC:4.2.1.11]
117916927  cytosolic enolase 3 isoform X1 [KO:K01689] [EC:4.2.1.11]
117920491  enolase [KO:K01689] [EC:4.2.1.11]
117920711  pyruvate kinase 1, cytosolic-like [KO:K00873] [EC:2.7.1.40]
117934164  plastidial pyruvate kinase 4, chloroplastic [KO:K00873] [EC:2.7.1.40]
117934311  plastidial pyruvate kinase 2 [KO:K00873] [EC:2.7.1.40]
117911860  pyruvate kinase isozyme A, chloroplastic-like [KO:K00873] [EC:2.7.1.40]
117924003  pyruvate kinase, cytosolic isozyme [KO:K00873] [EC:2.7.1.40]
117914073  pyruvate kinase isozyme A, chloroplastic [KO:K00873] [EC:2.7.1.40]
117916142  pyruvate kinase, cytosolic isozyme [KO:K00873] [EC:2.7.1.40]
117928630  pyruvate kinase 1, cytosolic-like isoform X1 [KO:K00873] [EC:2.7.1.40]
117919305  pyruvate kinase isozyme A, chloroplastic-like [KO:K00873] [EC:2.7.1.40]
117931543  pyruvate kinase isozyme G, chloroplastic [KO:K00873] [EC:2.7.1.40]
117920172  pyruvate kinase, cytosolic isozyme-like [KO:K00873] [EC:2.7.1.40]
117920354  pyruvate kinase, cytosolic isozyme-like [KO:K00873] [EC:2.7.1.40]
117920355  pyruvate kinase 1, cytosolic [KO:K00873] [EC:2.7.1.40]
117914566  pyruvate, phosphate dikinase, chloroplastic isoform X1 [KO:K01006] [EC:2.7.9.1]
117922231  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
117915666  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
117932378  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
117913390  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
117925665  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
117903965  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
117919833  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
117922242  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
117925731  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
117928878  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
117918191  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
117907742  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
117914863  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
117914956  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
117929810  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
117926640  L-lactate dehydrogenase B [KO:K00016] [EC:1.1.1.27]
117932737  L-lactate dehydrogenase B-like [KO:K00016] [EC:1.1.1.27]
117923839  pyruvate decarboxylase 1 [KO:K01568] [EC:4.1.1.1]
117916594  pyruvate decarboxylase 1-like isoform X1 [KO:K01568] [EC:4.1.1.1]
117920461  pyruvate decarboxylase 2 [KO:K01568] [EC:4.1.1.1]
117915859  8-hydroxygeraniol oxidoreductase-like [KO:K00121] [EC:1.1.1.284 1.1.1.1]
117915871  8-hydroxygeraniol oxidoreductase-like [KO:K00121] [EC:1.1.1.284 1.1.1.1]
117917071  8-hydroxygeraniol oxidoreductase-like [KO:K00121] [EC:1.1.1.284 1.1.1.1]
117906124  alcohol dehydrogenase-like 1 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
117917546  alcohol dehydrogenase class-3 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
117907584  alcohol dehydrogenase-like 7 isoform X1 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
117907776  alcohol dehydrogenase-like 7 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
117912983  alcohol dehydrogenase 1-like [KO:K18857] [EC:1.1.1.1]
117912984  alcohol dehydrogenase 1 isoform X1 [KO:K18857] [EC:1.1.1.1]
117912985  alcohol dehydrogenase 1-like [KO:K18857] [EC:1.1.1.1]
117905469  alcohol dehydrogenase 1-like [KO:K18857] [EC:1.1.1.1]
117907242  alcohol dehydrogenase-like [KO:K18857] [EC:1.1.1.1]
117933096  alcohol dehydrogenase-like 3 [KO:K00001] [EC:1.1.1.1]
117933505  alcohol dehydrogenase-like 6 [KO:K00001] [EC:1.1.1.1]
117921198  aldose reductase [KO:K00002] [EC:1.1.1.2]
117916974  aldo-keto reductase family 4 member C10-like [KO:K00002] [EC:1.1.1.2]
117919793  NADPH-dependent aldo-keto reductase, chloroplastic-like [KO:K00002] [EC:1.1.1.2]
117919927  NADPH-dependent aldo-keto reductase, chloroplastic-like [KO:K00002] [EC:1.1.1.2]
117919928  NADPH-dependent aldo-keto reductase, chloroplastic-like [KO:K00002] [EC:1.1.1.2]
117919929  NADPH-dependent aldo-keto reductase, chloroplastic-like isoform X1 [KO:K00002] [EC:1.1.1.2]
117920038  NADPH-dependent aldo-keto reductase, chloroplastic-like [KO:K00002] [EC:1.1.1.2]
117911969  aldehyde dehydrogenase family 3 member F1 [KO:K00128] [EC:1.2.1.3]
117915686  aldehyde dehydrogenase family 2 member B4, mitochondrial-like [KO:K00128] [EC:1.2.1.3]
117915712  aldehyde dehydrogenase family 3 member F1-like isoform X1 [KO:K00128] [EC:1.2.1.3]
117904975  aldehyde dehydrogenase family 2 member B4, mitochondrial-like [KO:K00128] [EC:1.2.1.3]
117918748  aldehyde dehydrogenase family 3 member H1-like isoform X1 [KO:K00128] [EC:1.2.1.3]
117931058  aldehyde dehydrogenase family 2 member B7, mitochondrial-like [KO:K00128] [EC:1.2.1.3]
117907850  aldehyde dehydrogenase family 3 member H1-like [KO:K00128] [EC:1.2.1.3]
117922584  aldehyde dehydrogenase family 7 member A1-like isoform X1 [KO:K14085] [EC:1.2.1.31 1.2.1.8 1.2.1.3]
117925129  aldehyde dehydrogenase family 7 member A1 [KO:K14085] [EC:1.2.1.31 1.2.1.8 1.2.1.3]
117910255  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like isoform X1 [KO:K01895] [EC:6.2.1.1]
117929804  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
117913811  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
117914672  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
117904678  aldose 1-epimerase isoform X1 [KO:K01785] [EC:5.1.3.3]
117904884  aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
117931266  aldose 1-epimerase-like [KO:K01785] [EC:5.1.3.3]
117933642  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
117915456  phosphoglucomutase, cytoplasmic [KO:K01835] [EC:5.4.2.2]
117913509  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
117925146  putative glucose-6-phosphate 1-epimerase isoform X1 [KO:K01792] [EC:5.1.3.15]
117929231  putative glucose-6-phosphate 1-epimerase isoform X1 [KO:K01792] [EC:5.1.3.15]
117930427  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
117932217  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
117928149  multiple inositol polyphosphate phosphatase 1-like isoform X1 [KO:K03103] [EC:3.1.3.62 3.1.3.80]
117928150  multiple inositol polyphosphate phosphatase 1-like isoform X1 [KO:K03103] [EC:3.1.3.62 3.1.3.80]
117913436  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase-like [KO:K00131] [EC:1.2.1.9]
117925533  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
117918430  phosphoenolpyruvate carboxykinase (ATP)-like isoform X1 [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vri00020  Citrate cycle (TCA cycle)
vri00030  Pentose phosphate pathway
vri00500  Starch and sucrose metabolism
vri00620  Pyruvate metabolism
vri00640  Propanoate metabolism
vri00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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