KEGG   PATHWAY: vri00630
Entry
vri00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Vitis riparia (riverbank grape)
Class
Metabolism; Carbohydrate metabolism
Pathway map
vri00630  Glyoxylate and dicarboxylate metabolism
vri00630

Module
vri_M00012  Glyoxylate cycle [PATH:vri00630]
vri_M00532  Photorespiration [PATH:vri00630]
vri_M00621  Glycine cleavage system [PATH:vri00630]
Other DBs
GO: 0046487 0043648
Organism
Vitis riparia (riverbank grape) [GN:vri]
Gene
117926152  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
117910255  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like isoform X1 [KO:K01895] [EC:6.2.1.1]
117929804  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
117913811  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
117914672  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
117904408  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
117917722  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
117917723  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
117931734  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
117931745  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
117909644  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
117911303  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
117923908  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
117904394  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
117918935  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
117930858  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
117926507  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
117928738  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
117913627  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
117926812  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
117908908  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
117923516  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
117927036  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
117921991  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
117921992  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
117934186  (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
117924142  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
117925627  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
117912453  catalase isozyme 1-like [KO:K03781] [EC:1.11.1.6]
117906841  LOW QUALITY PROTEIN: catalase isozyme 1-like [KO:K03781] [EC:1.11.1.6]
117922490  hydroxyphenylpyruvate reductase-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
117904928  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
117904937  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
117932819  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
117921466  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
117919054  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
117919102  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
117911924  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
117924063  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
117918807  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
38346177  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
117914327  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
117925607  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
117904441  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
117916508  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
117913055  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
117920766  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
117914773  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
117904822  glutamine synthetase cytosolic isozyme 1 [KO:K01915] [EC:6.3.1.2]
117917670  glutamine synthetase leaf isozyme, chloroplastic-like [KO:K01915] [EC:6.3.1.2]
117918892  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
117930839  glutamine synthetase cytosolic isozyme 2 [KO:K01915] [EC:6.3.1.2]
117913437  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
117914617  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
117926711  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
117906511  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
117906787  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
117918841  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
117912556  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
117925023  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
117923984  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
117914863  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
117914956  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
117929810  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
117927834  glycine cleavage system H protein, mitochondrial [KO:K02437]
117906991  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
117909074  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
117922783  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
117930886  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
117932881  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
117918551  formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]
117918552  formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]
117919138  formamidase-like [KO:K01455] [EC:3.5.1.49]
117933910  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
117904253  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
vri00010  Glycolysis / Gluconeogenesis
vri00020  Citrate cycle (TCA cycle)
vri00030  Pentose phosphate pathway
vri00053  Ascorbate and aldarate metabolism
vri00071  Fatty acid degradation
vri00230  Purine metabolism
vri00250  Alanine, aspartate and glutamate metabolism
vri00260  Glycine, serine and threonine metabolism
vri00620  Pyruvate metabolism
vri00710  Carbon fixation by Calvin cycle
vri00750  Vitamin B6 metabolism
vri00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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