KEGG   PATHWAY: vsh00020
Entry
vsh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio mediterranei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vsh00020  Citrate cycle (TCA cycle)
vsh00020

Module
vsh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vsh00020]
vsh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vsh00020]
vsh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vsh00020]
vsh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vsh00020]
vsh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vsh00020]
Other DBs
GO: 0006099
Organism
Vibrio mediterranei [GN:vsh]
Gene
BSZ05_10270  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BSZ05_03775  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BSZ05_00890  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BSZ05_10295  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BSZ05_10300  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BSZ05_04125  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSZ05_17780  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSZ05_10310  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BSZ05_10305  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BSZ05_10285  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BSZ05_10290  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BSZ05_10275  succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
BSZ05_10280  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BSZ05_07715  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
BSZ05_07710  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
BSZ05_07705  fumarate reductase subunit C [KO:K00246]
BSZ05_07700  fumarate reductase subunit D [KO:K00247]
BSZ05_00080  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BSZ05_16355  transcriptional regulator [KO:K01774] [EC:4.2.1.2]
BSZ05_09095  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BSZ05_07160  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BSZ05_04135  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BSZ05_04130  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BSZ05_11420  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vsh00010  Glycolysis / Gluconeogenesis
vsh00053  Ascorbate and aldarate metabolism
vsh00061  Fatty acid biosynthesis
vsh00071  Fatty acid degradation
vsh00190  Oxidative phosphorylation
vsh00220  Arginine biosynthesis
vsh00250  Alanine, aspartate and glutamate metabolism
vsh00280  Valine, leucine and isoleucine degradation
vsh00350  Tyrosine metabolism
vsh00470  D-Amino acid metabolism
vsh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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