KEGG   PATHWAY: vtr00020
Entry
vtr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Vallotia tarda
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vtr00020  Citrate cycle (TCA cycle)
vtr00020

Module
vtr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vtr00020]
vtr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vtr00020]
vtr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vtr00020]
vtr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vtr00020]
Other DBs
GO: 0006099
Organism
Candidatus Vallotia tarda [GN:vtr]
Gene
MYVALT_F_02050  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
MYVALT_F_01960  acoA; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MYVALT_F_01080  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MYVALT_F_03340  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MYVALT_F_03330  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
MYVALT_F_02300  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MYVALT_F_03320  odhL; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MYVALT_G_01720  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MYVALT_G_01710  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MYVALT_F_02020  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MYVALT_F_02030  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MYVALT_F_02000  Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
MYVALT_F_02010  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
MYVALT_F_02680  Fumarate hydratase [KO:K01676] [EC:4.2.1.2]
MYVALT_F_01970  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MYVALT_F_02280  pdhA; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MYVALT_F_02290  pdhB; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vtr00010  Glycolysis / Gluconeogenesis
vtr00061  Fatty acid biosynthesis
vtr00190  Oxidative phosphorylation
vtr00220  Arginine biosynthesis
vtr00250  Alanine, aspartate and glutamate metabolism
vtr00280  Valine, leucine and isoleucine degradation
vtr00350  Tyrosine metabolism
vtr00470  D-Amino acid metabolism
vtr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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