KEGG   PATHWAY: vvi00010
Entry
vvi00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Vitis vinifera (wine grape)
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vvi00010  Glycolysis / Gluconeogenesis
vvi00010

Module
vvi_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:vvi00010]
vvi_M00002  Glycolysis, core module involving three-carbon compounds [PATH:vvi00010]
vvi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vvi00010]
vvi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vvi00010]
Other DBs
GO: 0006096 0006094
Organism
Vitis vinifera (wine grape) [GN:vvi]
Gene
100853826  probable hexokinase-like 2 protein [KO:K00844] [EC:2.7.1.1]
100242358  hexokinase-1 [KO:K00844] [EC:2.7.1.1]
100244595  hexokinase-2 [KO:K00844] [EC:2.7.1.1]
100263580  hexokinase-3 isoform X1 [KO:K00844] [EC:2.7.1.1]
100255753  HXK2; hexokinase [KO:K00844] [EC:2.7.1.1]
100262681  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
100252335  glucose-6-phosphate isomerase, cytosolic isoform X2 [KO:K01810] [EC:5.3.1.9]
100853702  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
100251605  ATP-dependent 6-phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
100243946  ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
100245746  ATP-dependent 6-phosphofructokinase 6 [KO:K00850] [EC:2.7.1.11]
100242301  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
100242517  ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X2 [KO:K00850] [EC:2.7.1.11]
100244809  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [KO:K00895] [EC:2.7.1.90]
100256839  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [KO:K00895] [EC:2.7.1.90]
100249662  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [KO:K00895] [EC:2.7.1.90]
100240924  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
100264087  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
100267988  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
100245998  fructose-bisphosphate aldolase 1, cytoplasmic [KO:K01623] [EC:4.1.2.13]
100262354  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
100265177  fructose-bisphosphate aldolase, cytoplasmic isozyme 1 [KO:K01623] [EC:4.1.2.13]
100852851  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
100263345  triosephosphate isomerase, cytosolic isoform X2 [KO:K01803] [EC:5.3.1.1]
100260576  triosephosphate isomerase, chloroplastic [KO:K01803] [EC:5.3.1.1]
100248352  triosephosphate isomerase, cytosolic [KO:K01803] [EC:5.3.1.1]
100264789  glyceraldehyde-3-phosphate dehydrogenase, cytosolic [KO:K00134] [EC:1.2.1.12]
100242264  glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic [KO:K00134] [EC:1.2.1.12]
100233024  glyceraldehyde-3-phosphate dehydrogenase, cytosolic [KO:K00134] [EC:1.2.1.12]
100265689  glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic isoform X2 [KO:K00134] [EC:1.2.1.12]
100244419  phosphoglycerate kinase, cytosolic [KO:K00927] [EC:2.7.2.3]
100249576  phosphoglycerate kinase, chloroplastic [KO:K00927] [EC:2.7.2.3]
100243165  uncharacterized protein LOC100243165 [KO:K00927] [EC:2.7.2.3]
100245371  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1 [KO:K01834] [EC:5.4.2.11]
100853988  phosphoglycerate mutase-like protein 4 [KO:K15634] [EC:5.4.2.11]
100245007  2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
100242642  enolase 1 [KO:K01689] [EC:4.2.1.11]
100265663  cytosolic enolase 3 [KO:K01689] [EC:4.2.1.11]
100254950  enolase [KO:K01689] [EC:4.2.1.11]
100256026  enolase 1, chloroplastic [KO:K01689] [EC:4.2.1.11]
100267318  pyruvate kinase, cytosolic isozyme [KO:K00873] [EC:2.7.1.40]
100255934  pyruvate kinase, cytosolic isozyme [KO:K00873] [EC:2.7.1.40]
100256253  pyruvate kinase isozyme A, chloroplastic [KO:K00873] [EC:2.7.1.40]
100261276  pyruvate kinase 1, cytosolic [KO:K00873] [EC:2.7.1.40]
100244565  pyruvate kinase isozyme A, chloroplastic [KO:K00873] [EC:2.7.1.40]
100246052  pyruvate kinase isozyme A, chloroplastic [KO:K00873] [EC:2.7.1.40]
100265797  pyruvate kinase, cytosolic isozyme [KO:K00873] [EC:2.7.1.40]
100247244  pyruvate kinase 1, cytosolic [KO:K00873] [EC:2.7.1.40]
100262029  plastidial pyruvate kinase 2 [KO:K00873] [EC:2.7.1.40]
100246758  plastidial pyruvate kinase 4, chloroplastic [KO:K00873] [EC:2.7.1.40]
100257566  pyruvate kinase isozyme G, chloroplastic isoform X1 [KO:K00873] [EC:2.7.1.40]
100853352  pyruvate kinase 1, cytosolic isoform X1 [KO:K00873] [EC:2.7.1.40]
100255318  pyruvate kinase, cytosolic isozyme [KO:K00873] [EC:2.7.1.40]
100247690  pyruvate, phosphate dikinase, chloroplastic isoform X1 [KO:K01006] [EC:2.7.9.1]
100263880  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
100243322  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
100264423  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
100264409  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
100259931  LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
100247469  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
100250049  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
100251405  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
100249200  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial isoform X4 [KO:K00627] [EC:2.3.1.12]
100243846  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
100245266  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
100261197  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
100251123  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X2 [KO:K00382] [EC:1.8.1.4]
100246037  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
100246616  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
100248878  L-lactate dehydrogenase B [KO:K00016] [EC:1.1.1.27]
100250615  L-lactate dehydrogenase A [KO:K00016] [EC:1.1.1.27]
100232858  pyruvate decarboxylase 2 [KO:K01568] [EC:4.1.1.1]
100242845  pyruvate decarboxylase 1 [KO:K01568] [EC:4.1.1.1]
100267272  pyruvate decarboxylase 1 isoform X2 [KO:K01568] [EC:4.1.1.1]
100264420  alcohol dehydrogenase-like 7 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
100258412  alcohol dehydrogenase class-3 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
100245520  alcohol dehydrogenase-like 1 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
100259248  alcohol dehydrogenase-like 7 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
100250105  8-hydroxygeraniol oxidoreductase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
100232854  ADH2; alcohol dehydrogenase 2 [KO:K18857] [EC:1.1.1.1]
100233102  ADH3; alcohol dehydrogenase 3 [KO:K18857] [EC:1.1.1.1]
100232853  ADH1; alcohol dehydrogenase 1 [KO:K18857] [EC:1.1.1.1]
100256495  alcohol dehydrogenase-like 3 [KO:K00001] [EC:1.1.1.1]
100254635  alcohol dehydrogenase-like 6 isoform X2 [KO:K00001] [EC:1.1.1.1]
100254427  NADPH-dependent aldo-keto reductase, chloroplastic [KO:K00002] [EC:1.1.1.2]
100259758  NADPH-dependent aldo-keto reductase, chloroplastic [KO:K00002] [EC:1.1.1.2]
100244158  NADPH-dependent aldo-keto reductase, chloroplastic isoform X1 [KO:K00002] [EC:1.1.1.2]
100241498  aldose reductase [KO:K00002] [EC:1.1.1.2]
100249597  aldo-keto reductase family 4 member C10 [KO:K00002] [EC:1.1.1.2]
100262043  benzaldehyde dehydrogenase, mitochondrial [KO:K00128] [EC:1.2.1.3]
100247106  aldehyde dehydrogenase family 3 member F1 [KO:K00128] [EC:1.2.1.3]
100253650  aldehyde dehydrogenase family 3 member F1 isoform X1 [KO:K00128] [EC:1.2.1.3]
100267386  benzaldehyde dehydrogenase, mitochondrial [KO:K00128] [EC:1.2.1.3]
100248915  aldehyde dehydrogenase family 3 member H1 [KO:K00128] [EC:1.2.1.3]
100259296  aldehyde dehydrogenase family 2 member B7, mitochondrial [KO:K00128] [EC:1.2.1.3]
100266331  aldehyde dehydrogenase family 3 member H1 isoform X1 [KO:K00128] [EC:1.2.1.3]
100262805  benzaldehyde dehydrogenase, mitochondrial-like [KO:K00128] [EC:1.2.1.3]
100252622  aldehyde dehydrogenase family 7 member A1 isoform X1 [KO:K14085] [EC:1.2.1.31 1.2.1.8 1.2.1.3]
100261802  aldehyde dehydrogenase family 7 member B4 isoform X2 [KO:K14085] [EC:1.2.1.31 1.2.1.8 1.2.1.3]
100263518  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
100267152  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
100244843  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
100256158  uncharacterized protein LOC100256158 [KO:K01785] [EC:5.1.3.3]
100250907  uncharacterized protein LOC100250907 [KO:K01785] [EC:5.1.3.3]
100245569  uncharacterized protein LOC100245569 [KO:K01785] [EC:5.1.3.3]
100256955  uncharacterized protein LOC100256955 [KO:K01785] [EC:5.1.3.3]
100247590  phosphoglucomutase, chloroplastic isoform X2 [KO:K01835] [EC:5.4.2.2]
100266376  phosphoglucomutase, cytoplasmic [KO:K01835] [EC:5.4.2.2]
100243178  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
100266308  putative glucose-6-phosphate 1-epimerase isoform X2 [KO:K01792] [EC:5.1.3.15]
100259893  putative glucose-6-phosphate 1-epimerase isoform X2 [KO:K01792] [EC:5.1.3.15]
100248350  putative glucose-6-phosphate 1-epimerase isoform X1 [KO:K01792] [EC:5.1.3.15]
100266694  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
100253622  uncharacterized protein LOC100253622 isoform X1 [KO:K03103] [EC:3.1.3.62 3.1.3.80]
100248519  uncharacterized protein LOC100248519 isoform X1 [KO:K03103] [EC:3.1.3.62 3.1.3.80]
100249114  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
100260378  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
100256754  phosphoenolpyruvate carboxykinase (ATP) 1 isoform X1 [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vvi00020  Citrate cycle (TCA cycle)
vvi00030  Pentose phosphate pathway
vvi00500  Starch and sucrose metabolism
vvi00620  Pyruvate metabolism
vvi00640  Propanoate metabolism
vvi00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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