KEGG   PATHWAY: vvm00020
Entry
vvm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio vulnificus MO6-24/O
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vvm00020  Citrate cycle (TCA cycle)
vvm00020

Module
vvm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vvm00020]
vvm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vvm00020]
vvm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vvm00020]
vvm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vvm00020]
vvm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vvm00020]
Other DBs
GO: 0006099
Organism
Vibrio vulnificus MO6-24/O [GN:vvm]
Gene
VVMO6_02200  citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
VVMO6_00551  aconitate hydratase 2 / 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
VVMO6_00988  isocitrate dehydrogenase [NADP] / Monomeric isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
VVMO6_02195  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
VVMO6_02194  dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
VVMO6_00534  dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
VVMO6_02192  succinyl-CoA ligase [ADP-forming] beta chain [KO:K01902] [EC:6.2.1.5]
VVMO6_02193  succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
VVMO6_02197  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
VVMO6_02196  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
VVMO6_02199  succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
VVMO6_02198  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
VVMO6_00219  succinate dehydrogenase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
VVMO6_00218  succinate dehydrogenase flavoprotein subunit [KO:K00245] [EC:1.3.5.1]
VVMO6_00217  fumarate reductase subunit C [KO:K00246]
VVMO6_00216  fumarate reductase subunit D [KO:K00247]
VVMO6_01140  fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
VVMO6_02669  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
VVMO6_02875  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
VVMO6_00532  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
VVMO6_00533  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vvm00010  Glycolysis / Gluconeogenesis
vvm00053  Ascorbate and aldarate metabolism
vvm00061  Fatty acid biosynthesis
vvm00071  Fatty acid degradation
vvm00190  Oxidative phosphorylation
vvm00220  Arginine biosynthesis
vvm00250  Alanine, aspartate and glutamate metabolism
vvm00280  Valine, leucine and isoleucine degradation
vvm00350  Tyrosine metabolism
vvm00470  D-Amino acid metabolism
vvm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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