KEGG   PATHWAY: xas00020
Entry
xas00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Xanthomonas sp. SS
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xas00020  Citrate cycle (TCA cycle)
xas00020

Module
xas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:xas00020]
xas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xas00020]
xas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xas00020]
xas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:xas00020]
Other DBs
GO: 0006099
Organism
Xanthomonas sp. SS [GN:xas]
Gene
HEP74_00904  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
HEP74_03042  citrate synthase [KO:K01647] [EC:2.3.3.1]
HEP74_02222  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HEP74_02219  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HEP74_00544  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HEP74_03114  icd; isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
HEP74_01834  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HEP74_01833  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HEP74_03614  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HEP74_01832  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HEP74_01043  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
HEP74_01042  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HEP74_03751  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
HEP74_02444  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HEP74_02443  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HEP74_02446  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HEP74_02445  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HEP74_01771  fumB; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HEP74_01841  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HEP74_03164  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HEP74_03732  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HEP74_03615  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xas00010  Glycolysis / Gluconeogenesis
xas00053  Ascorbate and aldarate metabolism
xas00061  Fatty acid biosynthesis
xas00071  Fatty acid degradation
xas00190  Oxidative phosphorylation
xas00220  Arginine biosynthesis
xas00250  Alanine, aspartate and glutamate metabolism
xas00280  Valine, leucine and isoleucine degradation
xas00350  Tyrosine metabolism
xas00470  D-Amino acid metabolism
xas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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