KEGG   PATHWAY: xdi00630
Entry
xdi00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Xanthobacter dioxanivorans
Class
Metabolism; Carbohydrate metabolism
Pathway map
xdi00630  Glyoxylate and dicarboxylate metabolism
xdi00630

Module
xdi_M00621  Glycine cleavage system [PATH:xdi00630]
xdi_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:xdi00630]
Other DBs
GO: 0046487 0043648
Organism
Xanthobacter dioxanivorans [GN:xdi]
Gene
EZH22_06350  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
EZH22_07300  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
EZH22_12805  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
EZH22_23955  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
EZH22_26805  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
EZH22_28590  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
EZH22_02180  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
EZH22_07190  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
EZH22_17810  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EZH22_03875  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EZH22_12230  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
EZH22_18630  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
EZH22_27430  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EZH22_10300  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
EZH22_10520  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
EZH22_12385  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EZH22_14360  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
EZH22_16335  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
EZH22_18200  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EZH22_21895  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
EZH22_26605  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EZH22_00350  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EZH22_00425  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EZH22_02600  bktB; beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
EZH22_04520  thiolase family protein [KO:K00626] [EC:2.3.1.9]
EZH22_05245  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EZH22_05815  bktB; beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
EZH22_26610  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
EZH22_09630  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
EZH22_21710  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
EZH22_01060  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
EZH22_23740  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
EZH22_01050  protein meaA [KO:K14447] [EC:5.4.99.63]
EZH22_06665  acyl-CoA/acyl-ACP dehydrogenase [KO:K14448] [EC:1.3.8.12]
EZH22_04685  MaoC family dehydratase [KO:K14449] [EC:4.2.1.148]
EZH22_19265  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
EZH22_17555  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
EZH22_17560  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
EZH22_17535  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
EZH22_28020  methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
EZH22_07170  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
EZH22_29620  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
EZH22_07175  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
EZH22_29615  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
EZH22_07180  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
EZH22_29610  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
EZH22_27385  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
EZH22_09395  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
EZH22_03605  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
EZH22_10925  hydroxyacid dehydrogenase [KO:K22982] [EC:1.1.1.81]
EZH22_09585  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
EZH22_17265  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
EZH22_18020  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
EZH22_07030  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
EZH22_07025  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
EZH22_14410  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EZH22_19905  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
EZH22_00125  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EZH22_01375  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
EZH22_03435  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EZH22_04880  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EZH22_20330  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
EZH22_08640  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
EZH22_08635  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
EZH22_08655  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
EZH22_17070  aminomethyl transferase family protein [KO:K00605] [EC:2.1.2.10]
EZH22_21985  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EZH22_02010  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EZH22_03840  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EZH22_08650  gcvH; glycine cleavage system protein GcvH [KO:K02437]
EZH22_11545  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
EZH22_11540  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
EZH22_11535  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
EZH22_26625  glycerate kinase [KO:K11529] [EC:2.7.1.165]
EZH22_24845  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
EZH22_09280  cupin domain-containing protein [KO:K01569] [EC:4.1.1.2]
EZH22_17395  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
EZH22_14985  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
EZH22_17405  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
EZH22_14980  fdxH; formate dehydrogenase subunit beta [KO:K00124]
EZH22_17410  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
EZH22_14975  formate dehydrogenase subunit gamma [KO:K00127]
EZH22_17415  formate dehydrogenase subunit gamma [KO:K00127]
EZH22_08000  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
EZH22_27095  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
EZH22_03160  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
EZH22_16470  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
EZH22_03145  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
EZH22_03155  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
xdi00010  Glycolysis / Gluconeogenesis
xdi00020  Citrate cycle (TCA cycle)
xdi00030  Pentose phosphate pathway
xdi00053  Ascorbate and aldarate metabolism
xdi00071  Fatty acid degradation
xdi00230  Purine metabolism
xdi00250  Alanine, aspartate and glutamate metabolism
xdi00260  Glycine, serine and threonine metabolism
xdi00620  Pyruvate metabolism
xdi00710  Carbon fixation by Calvin cycle
xdi00750  Vitamin B6 metabolism
xdi00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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