KEGG   PATHWAY: xff00020
Entry
xff00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Xylella fastidiosa subsp. fastidiosa GB514
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xff00020  Citrate cycle (TCA cycle)
xff00020

Module
xff_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xff00020]
Other DBs
GO: 0006099
Organism
Xylella fastidiosa subsp. fastidiosa GB514 [GN:xff]
Gene
XFLM_09345  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
XFLM_06495  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
XFLM_06510  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
XFLM_04785  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
XFLM_04360  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
XFLM_09420  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
XFLM_09415  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
XFLM_04140  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
XFLM_04135  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
XFLM_07135  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
XFLM_07140  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
XFLM_07125  succinate dehydrogenase membrane anchor subunit [KO:K00241]
XFLM_07130  succinate dehydrogenase membrane anchor subunit [KO:K00242]
XFLM_10325  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
XFLM_09435  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
XFLM_07870  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
XFLM_03125  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
XFLM_01725  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
XFLM_03465  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xff00010  Glycolysis / Gluconeogenesis
xff00053  Ascorbate and aldarate metabolism
xff00061  Fatty acid biosynthesis
xff00190  Oxidative phosphorylation
xff00220  Arginine biosynthesis
xff00250  Alanine, aspartate and glutamate metabolism
xff00280  Valine, leucine and isoleucine degradation
xff00350  Tyrosine metabolism
xff00470  D-Amino acid metabolism
xff00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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