KEGG   PATHWAY: xfl00020
Entry
xfl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Xylella fastidiosa MUL0034
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xfl00020  Citrate cycle (TCA cycle)
xfl00020

Module
xfl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:xfl00020]
xfl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xfl00020]
xfl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xfl00020]
xfl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:xfl00020]
Other DBs
GO: 0006099
Organism
Xylella fastidiosa MUL0034 [GN:xfl]
Gene
P303_03695  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
P303_10645  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
P303_10630  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
P303_12230  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
P303_12670  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
P303_03765  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
P303_03760  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
P303_00805  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
P303_03750  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
P303_12905  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
P303_12910  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
P303_01220  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
P303_01225  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
P303_01210  succinate dehydrogenase [KO:K00241]
P303_01215  succinate dehydrogenase [KO:K00242]
P303_04985  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
P303_03785  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
P303_01950  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
P303_10100  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
P303_07270  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
P303_00810  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xfl00010  Glycolysis / Gluconeogenesis
xfl00053  Ascorbate and aldarate metabolism
xfl00061  Fatty acid biosynthesis
xfl00190  Oxidative phosphorylation
xfl00220  Arginine biosynthesis
xfl00250  Alanine, aspartate and glutamate metabolism
xfl00280  Valine, leucine and isoleucine degradation
xfl00350  Tyrosine metabolism
xfl00470  D-Amino acid metabolism
xfl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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