KEGG   PATHWAY: xla00030
Entry
xla00030                    Pathway                                
Name
Pentose phosphate pathway - Xenopus laevis (African clawed frog)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xla00030  Pentose phosphate pathway
xla00030

Module
xla_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:xla00030]
xla_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:xla00030]
xla_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:xla00030]
xla_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:xla00030]
Other DBs
GO: 0006098
Organism
Xenopus laevis (African clawed frog) [GN:xla]
Gene
444192  gpi.S; glucose-6-phosphate isomerase S homeolog [KO:K01810] [EC:5.3.1.9]
108714108  gpi.L; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
379711  g6pd.L; glucose-6-phosphate dehydrogenase L homeolog [KO:K00036] [EC:1.1.1.49 1.1.1.363]
108699968  g6pd.S; glucose-6-phosphate 1-dehydrogenase isoform X2 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
495503  pgls.S; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
108711684  pgls.L; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
108696534  h6pd.L; GDH/6PGL endoplasmic bifunctional protein isoform X1 [KO:K13937] [EC:1.1.1.47 3.1.1.31]
108697628  h6pd.S; GDH/6PGL endoplasmic bifunctional protein isoform X1 [KO:K13937] [EC:1.1.1.47 3.1.1.31]
398848  pgd.L; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
494647  rpe.S; ribulose-5-phosphate-3-epimerase S homeolog [KO:K01783] [EC:5.1.3.1]
379575  tktl2.L; transketolase-like 2 L homeolog [KO:K00615] [EC:2.2.1.1]
398860  tkt.L; transketolase L homeolog [KO:K00615] [EC:2.2.1.1]
780759  tkt.S; transketolase [KO:K00615] [EC:2.2.1.1]
495027  taldo1.L; transaldolase 1 L homeolog [KO:K00616] [EC:2.2.1.2]
414499  rpia.L; ribose 5-phosphate isomerase A L homeolog [KO:K01807] [EC:5.3.1.6]
779311  shpk.S; sedoheptulokinase S homeolog [KO:K11214] [EC:2.7.1.14]
734825  shpk.L; uncharacterized protein LOC734825 [KO:K11214] [EC:2.7.1.14]
496174  dera.S; deoxyribose-phosphate aldolase (putative) S homeolog [KO:K01619] [EC:4.1.2.4]
495991  rbks.L; ribokinase L homeolog [KO:K00852] [EC:2.7.1.15]
379864  pgm1.L; phosphoglucomutase 1 L homeolog [KO:K01835] [EC:5.4.2.2]
414455  phosphoglucomutase-1 isoform X1 [KO:K01835] [EC:5.4.2.2]
446420  pgm2l1.L; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
380347  prps2.L; ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
399237  prps1.L; phosphoribosyl pyrophosphate synthetase 1 L homeolog [KO:K00948] [EC:2.7.6.1]
108709681  ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
373659  rgn.L; regucalcin [KO:K01053] [EC:3.1.1.17]
108714570  idnk.L; probable gluconokinase [KO:K00851] [EC:2.7.1.12]
108714617  glyctk.L; glycerate kinase [KO:K11529] [EC:2.7.1.165]
379254  aldob.L; aldolase B, fructose-bisphosphate [KO:K01623] [EC:4.1.2.13]
379336  aldoa.S; aldolase, fructose-bisphosphate A S homeolog [KO:K01623] [EC:4.1.2.13]
379489  aldoa.L; uncharacterized protein LOC379489 [KO:K01623] [EC:4.1.2.13]
398623  aldob.S; aldolase, fructose-bisphosphate B S homeolog [KO:K01623] [EC:4.1.2.13]
380079  aldoc.L; fructose-bisphosphate aldolase C [KO:K01623] [EC:4.1.2.13]
380220  fbp1.L; fructose-1,6-bisphosphatase 1 [KO:K03841] [EC:3.1.3.11]
100381096  fbp2.L; fructose-bisphosphatase 2 L homeolog [KO:K03841] [EC:3.1.3.11]
779029  fbp1.S; fructose-1,6-bisphosphatase 1 [KO:K03841] [EC:3.1.3.11]
379632  pfkp.L; uncharacterized protein LOC379632 [KO:K00850] [EC:2.7.1.11]
446756  pfkm.S; phosphofructokinase, muscle S homeolog [KO:K00850] [EC:2.7.1.11]
100037146  pfkp.S; phosphofructokinase, platelet S homeolog [KO:K00850] [EC:2.7.1.11]
108708618  pfkm.L; ATP-dependent 6-phosphofructokinase, muscle type isoform X2 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
xla00010  Glycolysis / Gluconeogenesis
xla00040  Pentose and glucuronate interconversions
xla00052  Galactose metabolism
xla00230  Purine metabolism
xla00240  Pyrimidine metabolism
xla00340  Histidine metabolism
xla00630  Glyoxylate and dicarboxylate metabolism
xla00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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