KEGG   PATHWAY: xpr00020
Entry
xpr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Xanthomonas prunicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xpr00020  Citrate cycle (TCA cycle)
xpr00020

Module
xpr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:xpr00020]
xpr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xpr00020]
xpr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xpr00020]
xpr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:xpr00020]
Other DBs
GO: 0006099
Organism
Xanthomonas prunicola [GN:xpr]
Gene
MUG10_15120  citrate synthase [KO:K01647] [EC:2.3.3.1]
MUG10_22555  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
MUG10_22540  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MUG10_12770  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MUG10_04830  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
MUG10_01750  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MUG10_01755  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MUG10_13635  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUG10_01760  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUG10_15715  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MUG10_15710  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MUG10_20470  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MUG10_20480  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MUG10_20460  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MUG10_20465  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
MUG10_02360  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
MUG10_01710  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MUG10_05035  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MUG10_07390  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
MUG10_13625  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xpr00010  Glycolysis / Gluconeogenesis
xpr00053  Ascorbate and aldarate metabolism
xpr00061  Fatty acid biosynthesis
xpr00071  Fatty acid degradation
xpr00190  Oxidative phosphorylation
xpr00220  Arginine biosynthesis
xpr00250  Alanine, aspartate and glutamate metabolism
xpr00280  Valine, leucine and isoleucine degradation
xpr00350  Tyrosine metabolism
xpr00470  D-Amino acid metabolism
xpr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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