KEGG   PATHWAY: yas00020
Entry
yas00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Yersinia alsatica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
yas00020  Citrate cycle (TCA cycle)
yas00020

Module
yas_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:yas00020]
yas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:yas00020]
yas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:yas00020]
yas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:yas00020]
yas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:yas00020]
Other DBs
GO: 0006099
Organism
Yersinia alsatica [GN:yas]
Gene
N0H69_18300  citrate synthase [KO:K01647] [EC:2.3.3.1]
N0H69_14570  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
N0H69_03780  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
N0H69_12065  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
N0H69_18275  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
N0H69_18270  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
N0H69_03755  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N0H69_21290  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N0H69_18260  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
N0H69_18265  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
N0H69_18285  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
N0H69_18280  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
N0H69_18295  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
N0H69_18290  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
N0H69_01940  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
N0H69_01935  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
N0H69_01930  frdC; fumarate reductase subunit FrdC [KO:K00246]
N0H69_01925  frdD; fumarate reductase subunit FrdD [KO:K00247]
N0H69_04465  fumA; class I fumarate hydratase FumA [KO:K01676] [EC:4.2.1.2]
N0H69_09525  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
N0H69_14290  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
N0H69_02190  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
N0H69_00925  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
N0H69_03745  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
N0H69_03750  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
N0H69_13780  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
yas00010  Glycolysis / Gluconeogenesis
yas00053  Ascorbate and aldarate metabolism
yas00061  Fatty acid biosynthesis
yas00071  Fatty acid degradation
yas00190  Oxidative phosphorylation
yas00220  Arginine biosynthesis
yas00250  Alanine, aspartate and glutamate metabolism
yas00280  Valine, leucine and isoleucine degradation
yas00350  Tyrosine metabolism
yas00470  D-Amino acid metabolism
yas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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