KEGG   PATHWAY: yee00020
Entry
yee00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Yersinia enterocolitica (type O:5) YE53/03
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
yee00020  Citrate cycle (TCA cycle)
yee00020

Module
yee_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:yee00020]
yee_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:yee00020]
yee_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:yee00020]
yee_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:yee00020]
yee_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:yee00020]
Other DBs
GO: 0006099
Organism
Yersinia enterocolitica (type O:5) YE53/03 [GN:yee]
Gene
YE5303_33751  gltA; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
YE5303_18151  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
YE5303_26401  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
YE5303_15091  icdA; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
YE5303_33701  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
YE5303_33691  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
YE5303_42201  putative pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
YE5303_26431  lpdA; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
YE5303_33671  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
YE5303_33681  b0728; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
YE5303_33721  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
YE5303_33711  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
YE5303_33741  cybA; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
YE5303_33731  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
YE5303_29691  b4154; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
YE5303_29701  b4153; fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
YE5303_29711  b4152; fumarate reductase hydrophobic protein [KO:K00246]
YE5303_29721  b4151; fumarate reductase hydrophobic protein [KO:K00247]
YE5303_25101  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
YE5303_38701  fumB; fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
YE5303_18651  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
YE5303_29211  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
YE5303_38201  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
YE5303_26451  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
YE5303_26441  aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
YE5303_19471  nifJ; putative pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
yee00010  Glycolysis / Gluconeogenesis
yee00053  Ascorbate and aldarate metabolism
yee00061  Fatty acid biosynthesis
yee00071  Fatty acid degradation
yee00190  Oxidative phosphorylation
yee00220  Arginine biosynthesis
yee00250  Alanine, aspartate and glutamate metabolism
yee00280  Valine, leucine and isoleucine degradation
yee00350  Tyrosine metabolism
yee00470  D-Amino acid metabolism
yee00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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