KEGG   PATHWAY: yeg00020
Entry
yeg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Yersinia entomophaga
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
yeg00020  Citrate cycle (TCA cycle)
yeg00020

Module
yeg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:yeg00020]
yeg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:yeg00020]
yeg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:yeg00020]
yeg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:yeg00020]
yeg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:yeg00020]
Other DBs
GO: 0006099
Organism
Yersinia entomophaga [GN:yeg]
Gene
PL78_01430  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
PL78_05010  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PL78_14135  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PL78_03290  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PL78_01455  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
PL78_01460  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
PL78_14115  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PL78_07710  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PL78_01470  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
PL78_01465  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
PL78_01445  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
PL78_01450  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
PL78_01435  succinate dehydrogenase [KO:K00241]
PL78_01440  sdhD; succinate dehydrogenase [KO:K00242]
PL78_08240  fumarate reductase [KO:K00244] [EC:1.3.5.1]
PL78_08245  fumarate reductase [KO:K00245] [EC:1.3.5.1]
PL78_08250  fumarate reductase [KO:K00246]
PL78_08255  fumarate reductase [KO:K00247]
PL78_14630  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
PL78_05205  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PL78_12985  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PL78_15010  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PL78_11670  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PL78_14105  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
PL78_14110  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
PL78_05600  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
yeg00010  Glycolysis / Gluconeogenesis
yeg00053  Ascorbate and aldarate metabolism
yeg00061  Fatty acid biosynthesis
yeg00071  Fatty acid degradation
yeg00190  Oxidative phosphorylation
yeg00220  Arginine biosynthesis
yeg00250  Alanine, aspartate and glutamate metabolism
yeg00280  Valine, leucine and isoleucine degradation
yeg00350  Tyrosine metabolism
yeg00470  D-Amino acid metabolism
yeg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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