KEGG   PATHWAY: yet00020
Entry
yet00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Yersinia enterocolitica 2516-87
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
yet00020  Citrate cycle (TCA cycle)
yet00020

Module
yet_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:yet00020]
yet_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:yet00020]
yet_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:yet00020]
yet_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:yet00020]
yet_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:yet00020]
Other DBs
GO: 0006099
Organism
Yersinia enterocolitica 2516-87 [GN:yet]
Gene
CH48_2877  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CH48_3892  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CH48_902  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CH48_4106  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
CH48_2882  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
CH48_2883  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
CH48_906  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CH48_1810  glucose inhibited division A family protein [KO:K00382] [EC:1.8.1.4]
CH48_2885  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
CH48_2884  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
CH48_2880  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CH48_2881  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CH48_2878  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CH48_2879  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CH48_1231  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CH48_1232  frdB; fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
CH48_1233  frdC; fumarate reductase subunit C [KO:K00246]
CH48_1234  frdD; fumarate reductase subunit D [KO:K00247]
CH48_1488  hydrolyase, tartrate beta subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
CH48_2529  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
CH48_3833  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CH48_1176  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
CH48_1430  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CH48_908  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CH48_907  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
CH48_3723  nifJ; ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
yet00010  Glycolysis / Gluconeogenesis
yet00053  Ascorbate and aldarate metabolism
yet00061  Fatty acid biosynthesis
yet00071  Fatty acid degradation
yet00190  Oxidative phosphorylation
yet00220  Arginine biosynthesis
yet00250  Alanine, aspartate and glutamate metabolism
yet00280  Valine, leucine and isoleucine degradation
yet00350  Tyrosine metabolism
yet00470  D-Amino acid metabolism
yet00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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