KEGG   PATHWAY: ype00020
Entry
ype00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Yersinia pestis CO92 (biovar Orientalis)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ype00020  Citrate cycle (TCA cycle)
ype00020

Module
ype_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ype00020]
ype_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ype00020]
ype_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ype00020]
ype_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ype00020]
ype_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ype00020]
Other DBs
GO: 0006099
Organism
Yersinia pestis CO92 (biovar Orientalis) [GN:ype]
Gene
YPO1108  gltA; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
YPO2221  acn; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
YPO3415  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
YPO1641  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
YPO1113  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
YPO1114  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
YPO3917  putative pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
YPO3417  lpd; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
YPO1116  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
YPO1115  b0728; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
YPO1111  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
YPO1112  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
YPO1109  cybA; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
YPO1110  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
YPO0360  b4154; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
YPO0359  b4153; fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
YPO0358  b4152; fumarate reductase hydrophobic protein [KO:K00246]
YPO0357  b4151; fumarate reductase hydrophobic protein [KO:K00247]
YPO3335  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
YPO3516  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
YPO0138  pck; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
YPO3419  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
YPO3418  aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
YPO2334  nifJ; putative pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ype00010  Glycolysis / Gluconeogenesis
ype00053  Ascorbate and aldarate metabolism
ype00061  Fatty acid biosynthesis
ype00071  Fatty acid degradation
ype00190  Oxidative phosphorylation
ype00220  Arginine biosynthesis
ype00250  Alanine, aspartate and glutamate metabolism
ype00280  Valine, leucine and isoleucine degradation
ype00350  Tyrosine metabolism
ype00470  D-Amino acid metabolism
ype00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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