KEGG   PATHWAY: ypg00020
Entry
ypg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Yersinia pestis Angola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ypg00020  Citrate cycle (TCA cycle)
ypg00020

Module
ypg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ypg00020]
ypg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ypg00020]
ypg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ypg00020]
ypg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ypg00020]
ypg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ypg00020]
Other DBs
GO: 0006099
Organism
Yersinia pestis Angola [GN:ypg]
Gene
YpAngola_A1379  gltA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
YpAngola_A2230  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
YpAngola_A1028  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
YpAngola_A2848  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
YpAngola_A1384  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
YpAngola_A1385  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
YpAngola_A1031  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
YpAngola_A3889  pyridine nucleotide-disulfide oxidoreductase family protein [KO:K00382] [EC:1.8.1.4]
YpAngola_A1387  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
YpAngola_A1386  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
YpAngola_A1382  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
YpAngola_A1383  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
YpAngola_A1380  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
YpAngola_A1381  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
YpAngola_A0714  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
YpAngola_A0715  frdB; fumarate reductase, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
YpAngola_A0716  frdC; fumarate reductase, C subunit [KO:K00246]
YpAngola_A0717  frdD; fumarate reductase, D subunit [KO:K00247]
YpAngola_A0933  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
YpAngola_A2270  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
YpAngola_A3971  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
YpAngola_A3739  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
YpAngola_A1034  aceE; pyruvate dehydrogenase, E1 component [KO:K00163] [EC:1.2.4.1]
YpAngola_A1033  aceF; dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ypg00010  Glycolysis / Gluconeogenesis
ypg00053  Ascorbate and aldarate metabolism
ypg00061  Fatty acid biosynthesis
ypg00071  Fatty acid degradation
ypg00190  Oxidative phosphorylation
ypg00220  Arginine biosynthesis
ypg00250  Alanine, aspartate and glutamate metabolism
ypg00280  Valine, leucine and isoleucine degradation
ypg00350  Tyrosine metabolism
ypg00470  D-Amino acid metabolism
ypg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system